BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0135.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde dehydrog...   120   7e-29
gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde dehydrog...    69   2e-13
gi|300310410|ref|YP_003774502.1| NADP-dependent succinate-semial...    65   4e-12
gi|300311221|ref|YP_003775313.1| NAD+ dependent acetaldehyde deh...    60   7e-11
gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde ...    60   1e-10

>gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  120 bits (301), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 76/124 (61%)

Query: 1   MKTILIDGRWQAAQDERTIDVIDPSNAKVFSSISRGGEADVKLAVDAARRALSGPWGKMT 60
           MK   I  RW A     +I V+DPS+ + F +I+RG   D+  AV AAR A  G WG+++
Sbjct: 1   MKQHFIANRWVAPTSGESIPVLDPSDGQPFDAIARGNATDIDQAVRAARLAYEGAWGRLS 60

Query: 61  ATERGRLLQKLGELILANAEEIAQLEARDTGKPITVARNDVKVVARYFEFYGTAADKIHG 120
           A ER RLL KL   +  + EE+AQLE RD GKP+  AR D   + RYFEFY  AADK+HG
Sbjct: 61  AAERSRLLMKLAYKLQDHQEELAQLEGRDCGKPMKQARADAAAIVRYFEFYAGAADKLHG 120

Query: 121 XRQP 124
              P
Sbjct: 121 DTIP 124


>gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%)

Query: 4   ILIDGRWQAAQDERTIDVIDPSNAKVFSSISRGGEADVKLAVDAARRALSGPWGKMTATE 63
           + I+G W A+   RTIDVI+P+  +V   I+    AD+  A++AA +     W  M+A E
Sbjct: 7   LFINGEWTASASGRTIDVINPATEEVIGKIAHADRADLDRALEAASKGFET-WRNMSAFE 65

Query: 64  RGRLLQKLGELILANAEEIAQLEARDTGKPITVARNDVKVVARYFEFYGTAADKIHGXRQ 123
           R +++++  +L+   AEE+A+L   + GKP+  A+ +    A   +++   A + +G   
Sbjct: 66  RSKIMRRAADLLRERAEEVARLMTMEQGKPLAEAKMETLGAADTIDWFAEEARRTYGRLV 125

Query: 124 P 124
           P
Sbjct: 126 P 126


>gi|300310410|ref|YP_003774502.1| NADP-dependent
           succinate-semialdehyde dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 484

 Score = 64.7 bits (156), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 5   LIDGRWQAAQDERTIDVIDPSNAKVFSSISRGGEADVKLAVDAARRALSGPWGKMTATER 64
            ++G+W  A     + V +P+N ++   +   G A+ + A++AA  A    W K TA ER
Sbjct: 15  FVNGQWCDADQGERLAVHNPANGELLGHVPLMGAAETRRAIEAANAAWPA-WKKKTAKER 73

Query: 65  GRLLQKLGELILANAEEIAQLEARDTGKPITVARNDVKVVARYFEFYGTAADKIHGXRQP 124
             +L++  EL+LAN +++A +   + GKP+  AR ++   A + E++     + +G   P
Sbjct: 74  SAILRRWYELMLANTDDLALIMTAEQGKPLAEARGEIGYAASFIEWFAEEGKRTYGDTIP 133


>gi|300311221|ref|YP_003775313.1| NAD+ dependent acetaldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score = 60.5 bits (145), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 5   LIDGRWQAAQDERTIDVIDPSNAKVFSSISRGGEADVKLAVDAARRALSGPWGKMTATER 64
            I G++         + I P   + F  ++R    DV+LA+DAA  A    WGK + TER
Sbjct: 22  FIGGKFVPPVKGEYFENISPVIGRAFCEVARSSAEDVELALDAAHAA-KKSWGKTSPTER 80

Query: 65  GRLLQKLGELILANAEEIAQLEARDTGKPI--TVARNDVKVVARYFEFYGTAADKIHGXR 122
             +L K+ + + AN E +A  E  D GKPI  T+A  D+ +   +F ++  A     G  
Sbjct: 81  ANMLLKIADRMEANLELLATAETLDNGKPIRETMAA-DIPLAIDHFRYFAAAVRTQEGSI 139

Query: 123 QP 124
            P
Sbjct: 140 CP 141


>gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 4   ILIDGRWQAAQDERTIDVIDPSNAKVFSSISRGGEADVKLAVDAARRALSGPWGKMTATE 63
             IDG+WQ  Q      V+ P+  +    I+ G  ADV  AV AARRA+   W   +  E
Sbjct: 18  FYIDGKWQPPQGSERAAVVAPATEERVCEIALGNAADVDQAVQAARRAIPA-WAATSPLE 76

Query: 64  RGRLLQKLGELILANAEEIAQLEARDTGKPITVARN 99
           R  LL ++  L+L  +E  AQ    + G PI+ AR 
Sbjct: 77  RAALLGRVHALLLERSELFAQALTLEMGAPISYART 112


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 458,075
Number of extensions: 15924
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 10
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 10
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)