BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0133.p (156 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 83 8e-18 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 81 5e-17 gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 80 6e-17 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 78 3e-16 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 73 8e-15 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 83.2 bits (204), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 45/193 (23%) Query: 2 SQPL-LQTSGLQLAFGGLVVADNINFELHPGERLAVIGQNGAGKTX-------------- 46 S PL LQ S LQ +G + N+N +H GE + ++G+NGAG+T Sbjct: 7 SAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKG 66 Query: 47 -----------------------YAPEDRVMFPTFTVEENLRLPCDVLGLPTAEVDR--R 81 Y PE+R +F + + EENL LP V ++ D+ Sbjct: 67 SIKINGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFV-----SKTDKGMS 121 Query: 82 LEKALTVVPQLKEMLPRSGAALSGGQGKIAALGRALMAGTRLVLLDEPFQGLAPVLATQY 141 +++ + P LKE G LSGG+ ++ A+ R L G RL+LLDE +GLAPV+ Sbjct: 122 IDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQAL 181 Query: 142 GESLRRLREIEYT 154 + L+ YT Sbjct: 182 ARMITTLKAKGYT 194 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 80.9 bits (198), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 87/186 (46%), Gaps = 40/186 (21%) Query: 5 LLQTSGLQLAFGGLVVADNINFELHPGERLAVIGQNGAGKT------------------- 45 +L S L A+G + V I+ E+ G+ + +IG NGAGKT Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 46 ------------------XYAPEDRVMFPTFTVEENLRL---PCDVLGLPTAEVDRRLEK 84 ++PE R +F T +V +NL L P P ++ LE+ Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 Query: 85 ALTVVPQLKEMLPRSGAALSGGQGKIAALGRALMAGTRLVLLDEPFQGLAPVLATQYGES 144 AL + P+LKE + LSGG+ ++ A+ RA+M ++LLDEP GLAP+L + Sbjct: 121 ALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 Query: 145 LRRLRE 150 + RL+E Sbjct: 181 IVRLKE 186 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 80.5 bits (197), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 52/175 (29%) Query: 15 FGGLVVADNINFELHPGERLAVIGQNGAGKTX---------------------------- 46 +G +V ++++F + GE LA++G+NG GKT Sbjct: 14 YGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIRWRGGDIARVAT 73 Query: 47 ---------YAPEDRVMFPTFTVEENLRLPCDVLGLPTAEVDR----RLEKALTVVPQLK 93 + P++R MFP+ +VEE+L + V+R L+K + P+L Sbjct: 74 HKRAHAGLGWVPQERFMFPSLSVEEHLTV-----------VERGGKWDLQKIYQIFPRLH 122 Query: 94 EMLPRSGAALSGGQGKIAALGRALMAGTRLVLLDEPFQGLAPVLATQYGESLRRL 148 E G LSGG+ ++ A+ RALM ++LLDEP +GLAP++ + + +RRL Sbjct: 123 ERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRRL 177 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 78.2 bits (191), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 39/183 (21%) Query: 5 LLQTSGLQLAFGGLVVADNINFELHPGERLAVIGQNGAGKTX------------------ 46 +LQ + +G + ++ + GE + +IG NGAGKT Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 47 -------------------YAPEDRVMFPTFTVEENLRLPCDVLGLPTAEVDRRLEKALT 87 +PE R +FP+ TV ENL++ +++ +E Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGA--FFASNEAIEQGIEYVFG 119 Query: 88 VVPQLKEMLPRSGAALSGGQGKIAALGRALMAGTRLVLLDEPFQGLAPVLATQYGESLRR 147 + P+LKE + +SGG+ ++ A+GRALM+ RL+LLDEP GLAP++ Q + +R Sbjct: 120 LFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRT 179 Query: 148 LRE 150 +RE Sbjct: 180 IRE 182 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 73.2 bits (178), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 44/184 (23%) Query: 5 LLQTSGLQLAFGGLVVADNINFELHPGERLAVIGQNGAGKTX------------------ 46 LL +GLQ +G V ++ + GE ++++G+NGAG++ Sbjct: 7 LLSVTGLQAGYGHSRVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLPSRGDCRFE 66 Query: 47 ------------------YAPEDRVMFPTFTVEENL---RLPCDVLGLPTAEVDRRLEKA 85 Y PE R +FPT +V +NL R P G E D Sbjct: 67 GRDISGLPTHAIARLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPGRGWCEDDIH---- 122 Query: 86 LTVVPQLKEMLPRSGAALSGGQGKIAALGRALMAGTRLVLLDEPFQGLAPVLATQYGESL 145 + P L + + AALSGG+ ++ ALGRAL+ L+L+DEP +GLAP + Q +L Sbjct: 123 -ALFPALYKRRQVAAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARAL 181 Query: 146 RRLR 149 + LR Sbjct: 182 QELR 185 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 525,060 Number of extensions: 23886 Number of successful extensions: 382 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 377 Number of HSP's successfully gapped: 27 Length of query: 156 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 78 Effective length of database: 1,250,540 Effective search space: 97542120 Effective search space used: 97542120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)