BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0131.p (301 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312954|ref|YP_003777046.1| amino acid ABC transporter perm... 149 2e-37 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 124 1e-29 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 112 3e-26 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 106 2e-24 gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC t... 100 2e-22 >gi|300312954|ref|YP_003777046.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 28/302 (9%) Query: 11 LDGLSYAALLFLVALGMTLVFGVMRILNMAHGSMYAFGGYFAATLGMWAVAAKFSPAWSF 70 L+ L + +LFL+A G+TL+FGVM +N+AHGS + VAA + A Sbjct: 10 LNSLQFGVMLFLIASGLTLIFGVMNFVNLAHGSFFMI---------GAYVAAVVAGASGS 60 Query: 71 VWL-LVAALVVGAVMGAVMEIFLLRRIYHKEQILQLLVTFAAFMIFEDLQRLIWGSQPYF 129 WL L+ AL A +G ++E + RR+Y K+ ++Q+L TFA +IF D R+IWG QP Sbjct: 61 FWLGLLVALPATAALGFLLEWVVFRRLYQKDHMVQVLATFAFILIFNDGVRMIWGPQPLP 120 Query: 130 VSDIVNYLGVAEVLGITYTRYQLMVLPGVALVVFFGLRHFLKSSSTGRQIVAVAHNREVA 189 ++ + G + G+ Y+ Y+L+V+ V +VV L + + G + A A+N E+ Sbjct: 121 LNMPAAFAGPVNLFGLPYSSYRLLVM-AVGVVVAIALYFLINRTRIGMWVRAGANNLEMV 179 Query: 190 MAMGIDARRICLVTFVVGSMLGALGGALASPTTSLVPGIGADMIVLSFAVVATAGLGQIE 249 AMGI+ R + + F G +L AL G + P ++ G+G D+++L+F VV G+G + Sbjct: 180 TAMGINIRLLFRLVFSFGLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIGGIGSVP 239 Query: 250 GTLITAILIG----LTRS-----FAVYLQPESEVLV-P-------YLIMVLVLLFRPQGL 292 G I A+++G L RS FA++L ++ V P YL+M+ VL +RP GL Sbjct: 240 GAAIGALIVGVVDTLGRSLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLFWRPSGL 299 Query: 293 FS 294 F Sbjct: 300 FP 301 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 150/285 (52%), Gaps = 26/285 (9%) Query: 22 LVALGMTLVFGVMRILNMAHGSMYAFGGYFAATLGMWAVAAKFSPAWSFVWLLVAALVVG 81 +++LG+ ++FG++ ++N AHG++Y G F A +G+ + + +V L+VA ++VG Sbjct: 27 MLSLGLAVIFGLLNVINFAHGTLYMLGA-FLAWMGLSYLGLNY-----WVMLIVAPILVG 80 Query: 82 AVMGAVMEIFLLRRIYHKEQILQLLVTFAAFMIFEDLQRLIWG--SQPYFVSDIVNYLGV 139 A G V+E +LR +Y + + LL+TF ++ E + R I+G QPY V D++ Sbjct: 81 A-FGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDLLQ---- 135 Query: 140 AEVLGITYTRYQLMVLPG-------VALVVFFGLRHFLKSSSTGRQIVAVAHNREVAMAM 192 T MVLP +L+V F ++ + G + A N ++ A Sbjct: 136 ------GATNLGFMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAF 189 Query: 193 GIDARRICLVTFVVGSMLGALGGALASPTTSLVPGIGADMIVLSFAVVATAGLGQIEGTL 252 GI+ + +T+ G L A G LA+P + P +G+++I+ FAVV G+G I G++ Sbjct: 190 GINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSI 249 Query: 253 ITAILIGLTRSFAVYLQPESEVLVPYLIMVLVLLFRPQGLFSVAQ 297 IT +++GL PE V ++IM +VL+ RP GLF + Sbjct: 250 ITGLVLGLIEGLTRVFYPELSATVVFIIMAIVLMVRPAGLFGKEK 294 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 13/311 (4%) Query: 1 MNQELFLLA--MLDGLSYAALLFLVALGMTLVFGVMRILNMAHGSMYAFGGYFA-ATLGM 57 MN+ L L +++GLS A+ L+A+G T+V+G++ ++N AHG +Y Y TL Sbjct: 1 MNELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTA 60 Query: 58 WAVAAKFSPAWSFVWLLVAALVVGAVMGAVMEIFLLRRIYHKEQILQLLVTFAAFMIFED 117 V + + L+ +++V + G +E R + +++ L+ + ++ Sbjct: 61 IGVQSGYPLPLLLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQN 120 Query: 118 LQRLIWGSQ----PYFVSDIVNY-LGVAEVLGITYTRYQLMVLPGVALVVFFGLRHFLKS 172 ++ G++ P +S + + +G + I Y+R MV+ GV LV+ L F+ Sbjct: 121 YVQIGQGARDMSVPVLISGALEFQMGSDFTVTIPYSR---MVIVGVTLVLMVALTLFIAR 177 Query: 173 SSTGRQIVAVAHNREVAMAMGIDARRICLVTFVVGSMLGALGGALASPTT-SLVPGIGAD 231 S GR A A + +A +GID ++ TFV+G+ML A+GG L + T L P IG Sbjct: 178 SRMGRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFI 237 Query: 232 MIVLSFAVVATAGLGQIEGTLITAILIGLTRSFAV-YLQPESEVLVPYLIMVLVLLFRPQ 290 + +F G+G I G ++ +L+GL +FA YL E + +V + ++VL+LLFRP Sbjct: 238 AGIKAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPT 297 Query: 291 GLFSVAQARRV 301 GL +V Sbjct: 298 GLLGKPDVEKV 308 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 148/294 (50%), Gaps = 16/294 (5%) Query: 10 MLDGLSYAALLFLVALGMTLVFGVMRILNMAHGSMYAFGGYFAATLGMWAVAAKFSPAWS 69 +L+GL+ A+ +F+VA G++L+FGV RI+N AHGS Y G Y A +L V + W Sbjct: 10 LLNGLADASAMFMVAAGLSLIFGVTRIVNFAHGSFYMLGLYLAYSL----VDRLGATPWG 65 Query: 70 FVWLLVAALVVGAVMGAVMEIFLLRRIYHKEQILQLLVTFAAFMIFEDLQRLIWGSQPYF 129 + L+ A + A +GA++E+ +LRRIY ++ QLL TFA ++ +D WG + F Sbjct: 66 YWAALLLAALPVAALGALVELTILRRIYRAPELFQLLATFALVLVIKDAALWYWGPEDLF 125 Query: 130 VSDIVNYLGVAEVLGITYTRYQLMVLPGVALVVFFGLRHFLKSSSTGRQIVAVAHNREVA 189 G +VLG +Y L+++ + +VF L L + G I A +RE+ Sbjct: 126 GPRAPGLAGAVQVLGRRLPQYDLLLM-AIGPLVFALLWLLLNRTRWGALIRAATQDREML 184 Query: 190 MAMGIDARRICLVTFVVGSMLGALGGALASPTTSLVPGIGADMIVLSFAVVATAGLGQIE 249 A+G++ + F +G L LGGAL P + D I +F VV G+G I Sbjct: 185 GALGVNQAWLFTGVFALGCFLAGLGGALQGPRLPANLALDLDTIGTAFVVVVVGGMGSIG 244 Query: 250 GTLITAILI----------GLTRSFAVYLQPESEVLV-PYLIMVLVLLFRPQGL 292 G A+LI G F + L LV +L+M ++L+ RP GL Sbjct: 245 GAFAAAVLIAEVKALCIALGTVSCFGIELSLSRLTLVAEFLVMAVILVVRPWGL 298 >gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 149/294 (50%), Gaps = 19/294 (6%) Query: 4 ELFLLAMLDGLSYAALLFLVALGMTLVFGVMRILNMAHGSMYAFGGY--FAAT---LGMW 58 ++LL + +G+ L FL+A+G+++VFG++R +N +HG+ + G Y F T LG W Sbjct: 2 NIYLLQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQVTDLGLGFW 61 Query: 59 AVAAKFSPAWSFVWLLVAALVVGAVMGAVMEIFLLRRIYHKEQILQLLVTFAAFMIFEDL 118 WS LL+A LVVG + ++E F+LR +Y +L T ++ ++ Sbjct: 62 ---------WS---LLIAPLVVG-LFAWIVERFVLRHVYALPHHFHILFTVGMALVIQEA 108 Query: 119 QRLIWGSQPYFVSDIVNYLGVAEVLGITYTRYQLMVLPGVALVVFFGLRHFLKSSSTGRQ 178 WG V+ GV G Y +Y+L V+ G+ V+ L L+ + G Sbjct: 109 VISTWGPLGNNVAPPDLLQGVVMWGGFVYPKYRLFVI-GLTAVMALLLWWVLEGTRLGSI 167 Query: 179 IVAVAHNREVAMAMGIDARRICLVTFVVGSMLGALGGALASPTTSLVPGIGADMIVLSFA 238 + A + + E+ +G++ RI + F +G+ L GALA+P P +G + + ++F Sbjct: 168 VRAGSESTEMVSLLGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFV 227 Query: 239 VVATAGLGQIEGTLITAILIGLTRSFAVYLQPESEVLVPYLIMVLVLLFRPQGL 292 VV GLG G LI IL+G+ +S + E L+ Y+ M V+L RP GL Sbjct: 228 VVVIGGLGSFWGALIGGILVGIVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGL 281 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.332 0.143 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 799,886 Number of extensions: 30433 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 21 Length of query: 301 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 216 Effective length of database: 1,217,395 Effective search space: 262957320 Effective search space used: 262957320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)