BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0128.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit [Her...   295   3e-81

>gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  295 bits (754), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/253 (60%), Positives = 184/253 (72%), Gaps = 9/253 (3%)

Query: 1   VDLEDAVAPAAKTQARDTLADWLTQQANQQSNQPANQQDKLWVRINAADTQWYDDDVRCF 60
           VDLEDAVA   K  AR+TLA WL     Q S      Q +LWVRINAADT W++ D+  F
Sbjct: 30  VDLEDAVARPYKEAARETLARWLAGPEGQAS------QARLWVRINAADTVWHEQDLLTF 83

Query: 61  ANAPIAGIVLPKADDCDAIRNIARHFVGPRSHTRLLPLIETAVGIAQMRDIARARHVERL 120
           +  P+AGIVLPKA+D   +  +A      RS + L+ LIE+A G+A MR IA A  V+RL
Sbjct: 84  SALPVAGIVLPKAEDAAGVGAVAGAL---RSGSGLIALIESAAGLAAMRQIAAAPGVQRL 140

Query: 121 VFGSIDLQVDLGIQCEPQESELTHLRVEMVIASRLANIAQPVDGVTTTFDDLPFLEHAVS 180
            FGSID Q+DLG+QC P+E EL  LRVEMV+ASRLA IA PVDGVT  FDD   L   V 
Sbjct: 141 AFGSIDAQLDLGMQCGPEEEELLSLRVEMVLASRLAGIAAPVDGVTAGFDDEALLVRGVE 200

Query: 181 RARRIGFGAKLCIHPRQVDIVNQGFLPSAEEIAWARAVMAAVAQSDGGAISLNGKMIDKP 240
           RARR+GFGAKLCIHPRQV++V +GFLPS +E+AWA  VMAAV  SDGGAISL G+MID+P
Sbjct: 201 RARRLGFGAKLCIHPRQVEVVRRGFLPSEQELAWAAEVMAAVRASDGGAISLKGRMIDRP 260

Query: 241 VIMQAEKFLRQIG 253
           +I+QAEKFLRQ+G
Sbjct: 261 LILQAEKFLRQVG 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 720,819
Number of extensions: 26088
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)