BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0126.p (337 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 582 e-167 gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 139 4e-34 gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 72 4e-14 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 582 bits (1501), Expect = e-167, Method: Compositional matrix adjust. Identities = 284/340 (83%), Positives = 311/340 (91%), Gaps = 3/340 (0%) Query: 1 MMPSTRPLEGITVVSLEHAIAAPFCTRQLADMGARVIKVERPGVGDFARGYDERVNGLSS 60 M PS RPLEGITV+SLEHAIAAPFCTRQLAD+GARVIK+ERPGVGDFARGYD RVNGLSS Sbjct: 1 MSPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSS 60 Query: 61 HFVWTNRSKESLTLNLKDADGKAIIDKLLDEADVLVQNLAPGAAAGLGLSAAVLHRKNPH 120 HFVWTNRSKESLTLNLKD +G+ IID+LL +ADVLVQNLAPGAAAGLGLSA LH ++P Sbjct: 61 HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPR 120 Query: 121 LIVCDISGYGENGPYRDKKAYDLLIQSEAGFLSVTGTADEQAKAGCSIADIAAGMYAYSH 180 LIVCDISGYGE+GPYRDKKAYDLLIQSEAGFLSVTGT D+ KAGCSIADIAAGMYAYS+ Sbjct: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVKAGCSIADIAAGMYAYSN 180 Query: 181 ILAALIK---RGRDGEGSHIDLSMLESLTEWMSFPMYYAYQGASAPLRSGAEHATIYPYG 237 ILAALIK GR+G GSHIDLSMLESL EWMSFP+YYAYQGASAPLRSGAEHATIYPYG Sbjct: 181 ILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGASAPLRSGAEHATIYPYG 240 Query: 238 PFTAGDGKVVMLGLQNEREWKVFCESVLQDPALAQDARFSTNSRRHENRAELRKLILDMF 297 PF+AGDGK VMLGLQNEREWKVFCE VLQD ALA DARFS+N+RRHE+R LR+LILD+F Sbjct: 241 PFSAGDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQLILDVF 300 Query: 298 TPLTAQEVVARLDQAQIANASVNTMQDLWEHPQLAARERW 337 L+A++V ARLD+AQIANA VNTMQ+LW+HPQLAAR+RW Sbjct: 301 AGLSAEQVAARLDEAQIANARVNTMQELWQHPQLAARQRW 340 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 139 bits (349), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 164/345 (47%), Gaps = 18/345 (5%) Query: 7 PLEGITVVSLEHAIAAPFCTRQLADMGARVIKVERPGVGDFARGYDERVNGLSSHFVWTN 66 PL GI V+ L IA PFC+R LA+ GA VIKVE PG GD R + +G S + Sbjct: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQA 69 Query: 67 RSKESLTLNLKDADGKAIIDKLLDEADVLVQNLAPGAAAGLGLSAAVLHRKNPHLIVCDI 126 R+K+S+TLN+KD + I KL EADV+++N PG L L + NP I+ + Sbjct: 70 RNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRL 129 Query: 127 SGYGENGPYRDKKAYDLLIQSEAGFLSVTGTADE-QAKAGCSIADIAAGMYAYSHILAAL 185 SGYG+ GP RD + + +S G V+G D + G SI D A ++ + AL Sbjct: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMAL 189 Query: 186 I-----------KRGRD---GEGSHIDLSMLESLTEWM-SFPMYYAYQGASAPLRSGAEH 230 K+G D G+G +D+++ E++ M S + + G R+G Sbjct: 190 RHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRE-RTGGAL 248 Query: 231 ATIYPYGPFTAGDGKVVMLGLQNEREWKVFCESVLQDPALAQDARFSTNSRRHENRAELR 290 I P +T G+G +++ + +K ++ ++ +A D + N R E+ Sbjct: 249 PGIVPSNTYTTGEGMNIVIAGNGDAIFKRLMSAIGRE-DMANDPGLARNDGRVPRTEEID 307 Query: 291 KLILDMFTPLTAQEVVARLDQAQIANASVNTMQDLWEHPQLAARE 335 I + T + +A L A + + +++D+ Q AR+ Sbjct: 308 AAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARD 352 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 72.4 bits (176), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 16/157 (10%) Query: 6 RPLEGITVVSLEHAIAAPFCTRQLADMGARVIKVERPGVGDFARGYDERVNGLSSHFVWT 65 RPL GI V+ L +A P TR LA +GA V++++ G++E N + + Sbjct: 206 RPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRID-------PYGWEE-PNTVPEVVL-- 255 Query: 66 NRSKESLTLNLKDADGKAIIDKLLDEADVLVQNLAPGAAAGLGLSAAVLHRKNPHLIVCD 125 K LNLKD + +L+ AD+LV A A LGL AA NP LI Sbjct: 256 --GKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDVS 313 Query: 126 ISGYGENGPYRDKKAYDLLIQSEAGF----LSVTGTA 158 + YG +G ++ ++ +D LIQ G + V G+A Sbjct: 314 LDAYGWSGAWQCRRGFDSLIQMSTGIAEAGMRVMGSA 350 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,036,397 Number of extensions: 41976 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 3 Length of query: 337 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 251 Effective length of database: 1,212,660 Effective search space: 304377660 Effective search space used: 304377660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)