BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0121.p
         (409 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop...    72   9e-14

>gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum
           seropedicae SmR1]
          Length = 395

 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 137/320 (42%), Gaps = 33/320 (10%)

Query: 92  GKLQGSGSKNIMLMIHYDTVFGIGEATKR-PFKITGNKA--FGPGVADAKGGALLIVYAL 148
           G   GS    I+L  H D V   G+     PFK+T      +  G  D KG    I  AL
Sbjct: 66  GPHAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKG---FIATAL 122

Query: 149 DIARER-GFKDYKTLTVLFNPDEEKSSLGSRDM---ISKLSADQDYVLVFEPPEADVVTV 204
            +  E       K + + F+ DEE   +G+  M   I K     D  +V EP   +VV V
Sbjct: 123 ALVPEYLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVV-V 181

Query: 205 ATNGIAYVHLDVKGRASHAGSAPEAGRNAAVELSNQIIQLKDL--GSQAKG--------- 253
           A  GI      V G+++H+   P+ G NA    +  I  ++D   G +A G         
Sbjct: 182 AHKGINVFACKVHGKSAHSSLTPQ-GCNAIEHAARLICAIRDFADGYKANGPYDQFFDVP 240

Query: 254 -TTVNWTVIQAGDRVNIIPEKASATADMRMSDVGEIQRVQADADKIIQKKLIPETEVKVK 312
            +T+    I+ G  VN IPE    T + R      +  +QA  DK I + L+P  +++ +
Sbjct: 241 FSTMTTNQIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLP--KMRTE 298

Query: 313 VENRRPPFSKNADSDRLAATADSIYKELGKSIT----PVSMRYGTDAGFAYNPKTGKPIV 368
             + R      A S  L A   +   EL +++T       + YGT+AG     + G P +
Sbjct: 299 FPDARVEIDNFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQ--QIGIPTI 356

Query: 369 LDGMGIVGDRIHSSDEWADL 388
           + G G +G+  H  +E+  L
Sbjct: 357 VCGPGDIGNA-HKPNEFVTL 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,258,362
Number of extensions: 54395
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,207,925
Effective search space: 388951850
Effective search space used: 388951850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)