BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0117.p (270 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312114|ref|YP_003776206.1| 3-oxoacyl-[acyl-carrier-protein... 308 4e-85 gi|300313237|ref|YP_003777329.1| dehydrogenase [Herbaspirillum s... 122 2e-29 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 107 1e-24 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 105 4e-24 gi|300310426|ref|YP_003774518.1| gluconate 5-dehydrogenase oxido... 104 9e-24 >gi|300312114|ref|YP_003776206.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 262 Score = 308 bits (788), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 167/275 (60%), Positives = 197/275 (71%), Gaps = 18/275 (6%) Query: 1 MDLGLQGKIALVCGASKGLGYACAEHLAREGAHVVIVARNQETLDQAAEKLRA----LGN 56 MDL L GK ALVC +SKGLG ACA LAREG HV ++AR +E L+ AA+++RA G Sbjct: 1 MDLRLNGKTALVCASSKGLGRACAHSLAREGVHVTMLARGREALEAAAQEIRAEVAATGA 60 Query: 57 IKVIAVATDIATPEGRAKALAAVEEIAGTMDKERGHGPDILVNNAG-PPLGDFRDWDREI 115 I + V+ DI TPEGRA ALAA DILV NAG P GDFRDW RE Sbjct: 61 I-ITTVSCDITTPEGRALALAACPAP------------DILVTNAGGPKPGDFRDWSRED 107 Query: 116 WLKAIDANMLTPVELIKATVDQMIKRGWGRIINITSSSVKAPRYDLGLSNGARSGLTGFV 175 W+ A+DANMLTP+ELIKATVD MI R +GRI+NITSS+V+AP LGLSNGARSGLTGFV Sbjct: 108 WIAAVDANMLTPIELIKATVDGMIARRFGRIVNITSSAVRAPIDILGLSNGARSGLTGFV 167 Query: 176 AGVSRHIAKSGVTINNLLPGSFETDRLRSSFVGSAKLTGETPDEVRLQRMAETPAGRFGD 235 AG++R VTINNLLPG FETDRLR++ G+A+ +G + DE+ +R PAGRFGD Sbjct: 168 AGLARKTVAHNVTINNLLPGPFETDRLRATASGAAQESGRSVDEILAERRKLNPAGRFGD 227 Query: 236 PDEFGATCAFLCSKHAGYINGQNVLMDGGAYPGIF 270 P EFG CA+LCS AG+I GQN+LMDGGAYPG F Sbjct: 228 PAEFGDACAYLCSAQAGFITGQNLLMDGGAYPGTF 262 >gi|300313237|ref|YP_003777329.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 122 bits (307), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/274 (34%), Positives = 134/274 (48%), Gaps = 15/274 (5%) Query: 1 MDLGLQGKIALVCGASKGLGYACAEHLAREGAHVVIVARNQETLDQAAEKLRALGNIKVI 60 M+L LQGK A+V G S G+G A AE LAREG V IVAR++ L++ A L +VI Sbjct: 1 MELKLQGKAAVVTGGSLGIGRAVAEALAREGVRVAIVARSKGKLEEVASALSQSTGTEVI 60 Query: 61 AVATDIATPEGRAKALAAVEEIAGTMDKERGHGPDILVNNAGPPLG----DFRDWDREIW 116 AVA D++ E A+A + G + DILVN A P G + + E Sbjct: 61 AVAADVSNTEQVEAAVAQAAQHFGRI--------DILVNGAAHPGGLVRSEIQHASPEGL 112 Query: 117 LKAIDANMLTPVELIKATVDQMIKRGWGRIINITSSSVKAPRYDLGLSNGARSGLTGFVA 176 L+ I+ ++ + KA M G+GRIINI + + + G+ N A LT Sbjct: 113 LEDINIKVVGYMRFAKAVAPHMRAGGYGRIINIGGLTGRGSKQLSGMRNVAICHLT---K 169 Query: 177 GVSRHIAKSGVTINNLLPGSFETDRLRSSFVGSAKLTGETPDEVRLQRMAETPAGRFGDP 236 +S + G+T+N + PG ET + + AKL G TP++V TP R Sbjct: 170 TLSDQLGPDGITVNVIHPGVVETPHIHELYEKEAKLQGLTPEQVEQNYAKATPIRRVLQV 229 Query: 237 DEFGATCAFLCSKHAGYINGQNVLMDGGAYPGIF 270 +E FL S A I G+++ +DGG GI+ Sbjct: 230 EEIADVVLFLASPRAAAITGESIAVDGGITRGIY 263 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/268 (29%), Positives = 124/268 (46%), Gaps = 26/268 (9%) Query: 5 LQGKIALVCGASKGLGYACAEHLAREGAHVVI-VARNQETLDQAAEKLRALGNIKVIAVA 63 + +IA V G G+G A L ++G VV N D+ +R G Sbjct: 1 MSKRIAYVTGGMGGIGTAICTRLCKDGYTVVAGCGPNSTRKDKWLATMREQG-------- 52 Query: 64 TDIATPEGRAKALAAVEEIAGTMDKERGHGPDILVNNAGPPL-GDFRDWDREIWLKAIDA 122 DI EG + + + E G D+LVNNAG G FR ++ W ID Sbjct: 53 FDIHASEGNVSNWESTKAAFEKVRAEIGE-VDVLVNNAGITRDGQFRKMSKDDWDAVIDT 111 Query: 123 NMLTPVELIKATVDQMIKRGWGRIINITSSSVKAPRYDLGLSN--GARSGLTGFVAGVSR 180 N+ + + K ++ M +RG+GRIINI SSV + G +N A++G+ GF +++ Sbjct: 112 NLNSLFNVTKQVIEGMCERGFGRIINI--SSVNGQKGQFGQTNYSTAKAGIHGFTMALAQ 169 Query: 181 HIAKSGVTINNLLPGSFETDRLRSSFVGSAKLTGETPDEVRLQRMAETPAGRFGDPDEFG 240 +A GVT+N + PG TD +R+ EV + ++ P R G+P+E Sbjct: 170 EVATKGVTVNTVSPGYIGTDMVRA-----------IRPEVLEKIVSGIPVKRLGEPEEIA 218 Query: 241 ATCAFLCSKHAGYINGQNVLMDGGAYPG 268 + A++ S GY G + ++GG Y G Sbjct: 219 SIVAWIASSEGGYATGSDFSLNGGLYMG 246 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 105 bits (262), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 125/266 (46%), Gaps = 22/266 (8%) Query: 5 LQGKIALVCGASKGLGYACAEHLAREGAHVVIVARNQETLDQAAEKLRALGNIKVIAVAT 64 LQG++ALV GAS+G+G A A LAR+GA V+ A ++ E L ALG Sbjct: 6 LQGQVALVTGASRGIGRAIATELARQGAKVIGTATSESGAAAITEYLAALGPEAGRGAVL 65 Query: 65 DIATPEGRAKALAAVEEIAGTMDKERGHGPDILVNNAGPPLGDF--RDWDREIWLKAIDA 122 ++ E ++A VE++ K+ G ILVNNAG R D E W I Sbjct: 66 NVNDAEA---SVALVEQV----QKDFGS-LSILVNNAGITQDQLAMRMKDEE-WDSVIAT 116 Query: 123 NMLTPVELIKATVDQMIKRGWGRIINITSSSVKAPRYDLGLSNGARSGLTGFVAGVSRHI 182 N+ L +A + M+K GRIINITS +A A++G+ G ++R I Sbjct: 117 NLTAVGRLSRAVLRGMMKARTGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREI 176 Query: 183 AKSGVTINNLLPGSFETDRLRSSFVGSAKLTGETPDEVRLQRMAETPAGRFGDPDEFGAT 242 +T+N + PG +TD R+ E LQ++ P GR G +E Sbjct: 177 GSRNITVNCVAPGFIDTDMTRA--------LNEQQSAAILQQI---PLGRLGAAEEIAYA 225 Query: 243 CAFLCSKHAGYINGQNVLMDGGAYPG 268 AFL S A YI G + ++GG Y G Sbjct: 226 VAFLASPQAAYITGTTLNVNGGMYMG 251 >gi|300310426|ref|YP_003774518.1| gluconate 5-dehydrogenase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 104 bits (259), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 86/267 (32%), Positives = 131/267 (49%), Gaps = 27/267 (10%) Query: 3 LGLQGKIALVCGASKGLGYACAEHLAREGAHVVIVARNQETLDQAAEKLRALGNIKVIAV 62 L+GK+AL+ G+S G+G A A +A+ GA +V+ R+ L A +LRA G+ I Sbjct: 15 FSLEGKLALITGSSGGIGLALARGMAQAGAAIVLNGRDAGKLAAVAAQLRAEGH--TIHE 72 Query: 63 ATDIATPEGRAKALAAVEEIAGTMDKERGHGP-DILVNNAG----PPLGDFRDWDREIWL 117 ++ AT K AAV++I E GP ILVNNAG PL +F++ D W Sbjct: 73 SSFDATSSEEVK--AAVQKI------ESEIGPIGILVNNAGIQRRNPLEEFKESD---WH 121 Query: 118 KAIDANMLTPVELIKATVDQMIKRGWGRIINITSSSVKAPRYDLGLSNGARSGLTGFVAG 177 I N+ + +A MI RG G+IINI S + R + + + F G Sbjct: 122 DLISTNLNSVFFAAQAVARHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKG 181 Query: 178 VSRHIAKSGVTINNLLPGSFETDRLRSSFVGSAKLTGETPDEVRLQRMAETPAGRFGDPD 237 ++ K G+ +N L PG F+T+ + + V AK T + TP+ R+GD + Sbjct: 182 MAIDWGKYGIQVNGLGPGYFKTE-MNMALVNDAKFTD--------WLVGRTPSRRWGDVE 232 Query: 238 EFGATCAFLCSKHAGYINGQNVLMDGG 264 + FL S + ++NG + +DGG Sbjct: 233 DLVGAAVFLASDASRFVNGHILYVDGG 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 917,764 Number of extensions: 39448 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 41 Length of query: 270 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 186 Effective length of database: 1,222,130 Effective search space: 227316180 Effective search space used: 227316180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)