BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0113.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isome...   122   2e-29

>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score =  122 bits (307), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 13/231 (5%)

Query: 52  VAIVNDQKITEEQVNTAVK---LTGLPDSPQLRSAIKSQLIARELFRQQAAKNPALEKRD 108
           +A+VN + I   +    VK     G PDSPQLR AIK +LI RE+  Q+A K   L    
Sbjct: 25  LAVVNGKAIPSSRAELMVKQMTAQGQPDSPQLRGAIKEELINREILMQEADKQ-GLANST 83

Query: 109 EVKKAMQFAKEAAVIQTYLRDAIKPAPVTEEMVREQFNAIVASLGPNEYKARLIQVADDA 168
           +VK  ++ A+++ VI+  + D +K  PV++  ++ +++   A  G  EY AR I V    
Sbjct: 84  DVKNQLELARQSIVIRALIADYLKKNPVSDADIKAEYDKFKAQAGDKEYHARHILVDKKE 143

Query: 169 AAQKVLEQLKAGTDFAKLAAQVSLASNKAKGGELEWISFKLPAQEGKTQNLPLPVAQAIA 228
            A+ ++ +LKAGT F  LA Q     + A GG+L+W +   PA   K      P + A+ 
Sbjct: 144 DAEAIIAKLKAGTKFEDLAKQSKDTGSAANGGDLDWAT---PASFVK------PFSDAMV 194

Query: 229 QLTPGALTPVPVVWNGERYIIRLDELRPTQIPQYDSVKVPLRQTMERQALE 279
            L  G +TP PV      ++I+L+++RP ++P  D VK  + + ++++ L+
Sbjct: 195 ALKKGEVTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQQKKLQ 245


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 843,300
Number of extensions: 33795
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)