BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0111.p
         (858 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin prote...   142   1e-34
gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer...    90   1e-18

>gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 2658

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/301 (38%), Positives = 159/301 (52%), Gaps = 50/301 (16%)

Query: 16  IVAD-----GGTATTVSTSGGRQTVNIA-PAVSGVSHNTYTEFNVGTAGAALNN------ 63
           IVAD     G      +T+ GR  V IA P+ +GVSHN Y++FNVG  GA LNN      
Sbjct: 40  IVADPNAGAGKRPVVDNTANGRPLVQIATPSAAGVSHNQYSQFNVGPNGAILNNARDVVL 99

Query: 64  ------VGVN-------ARNIVNQVTSTSPSLIQGDITVLGSRANVIIANPNGITVNGGS 110
                 VG N       AR I+N+VTSTSPS ++G   V G RA VIIANPNGI+ +G  
Sbjct: 100 TQQGGYVGANPNLQGGAARVILNEVTSTSPSQLRGYTEVAGQRAEVIIANPNGISCDGCG 159

Query: 111 FVNTGNVVLTTGQVSFNDITLSPGNVQRNIVLNTSQGQIVIGPNGLSGAILD-LELIAKQ 169
           F+NT   VLTTG      + L  GN         S+G I IG  GL+GA  D L+LIA+ 
Sbjct: 160 FINTSRGVLTTG------VPLFGGNGSLE-AFRVSRGAIQIGSGGLNGANTDQLDLIARS 212

Query: 170 ITVNGPVLNTVSNSAARIRTVAGGSHSEIDGSVSPTDLISTWIGHTASGSGNPGATTLDI 229
           + VNG +         R+  V G +       V+  DL  + I    +G GN     +D+
Sbjct: 213 VQVNGELWGN------RLNLVTGANR------VNYGDLGLSVI----AGEGNAPTIGVDV 256

Query: 230 TALGSLTAGRVELVITEQGAGVRHAGVIYANVGDFTIAGNGDLHIAGGRIQAANDVVMAN 289
             +G + A ++ LV TE G GVR  G + A  G FT++  G + ++ G+  A++D+V+ +
Sbjct: 257 ARMGGMYAQKIMLVGTENGVGVRSLGTLAAQAGSFTLSSQGQIALS-GKTSASDDIVLKS 315

Query: 290 A 290
           A
Sbjct: 316 A 316


>gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer
           membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 2685

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 142/299 (47%), Gaps = 50/299 (16%)

Query: 4   AFVQTSIAYAAGIVAD-----GGTATTVSTSGGRQTVNIA-PAVSGVSHNTYTEFNVGTA 57
           A V T     A I+AD           V+T+ G   VNI  P+ +GVS NTY++F+V  A
Sbjct: 62  ALVTTMPRAYAQIIADPNAPRAQQPVVVNTANGIPQVNIQTPSAAGVSRNTYSQFDVNRA 121

Query: 58  GAALNNVGVN-------------------ARNIVNQVTSTSPSLIQGDITVLGSRANVII 98
           GA LNN   +                   AR I+N+V S++PS+++G + V G RA VII
Sbjct: 122 GAILNNSRSDVQTQLGGWVQRNPNLANGTARVILNEVNSSNPSMLRGFVEVAGDRAQVII 181

Query: 99  ANPNGITVNGGSFVNTGNVVLTTGQVSFNDITLSPGNVQRNIVLNTSQGQIVIGPNGLSG 158
           ANP+G+T +G  F+N     LTTG    N+ +L  G + R        G + I  NGL+ 
Sbjct: 182 ANPSGVTCDGCGFINASRSTLTTGTPIINNGSLD-GYLVRG-------GVVSIKGNGLND 233

Query: 159 AILDL-ELIAKQITVNGPVLNTVSNSAARIRTVAGGSHSEIDGSVSPTDLISTWIGHTAS 217
           +     +LIA+   +N  +       +  ++   G +    D         +T +   ++
Sbjct: 234 SQSSFTDLIARAAKINAGIW------SKELKVTVGTNQVNAD---------NTTVTAVSA 278

Query: 218 GSGNPGATTLDITALGSLTAGRVELVITEQGAGVRHAGVIYANVGDFTIAGNGDLHIAG 276
               P    +D+  LG + A ++ LV TE G GVR+AG I A  G+ T+   G +  +G
Sbjct: 279 DPAKP-QFGIDVAQLGGMYANKIVLVGTESGVGVRNAGAIGAAAGELTLTAAGRIENSG 336


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,402,248
Number of extensions: 102148
Number of successful extensions: 449
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 5
Length of query: 858
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 765
Effective length of database: 1,179,515
Effective search space: 902328975
Effective search space used: 902328975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 135 (56.6 bits)