BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0104.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311624|ref|YP_003775716.1| hypothetical protein Hsero_2309...   224   8e-60

>gi|300311624|ref|YP_003775716.1| hypothetical protein Hsero_2309
           [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  224 bits (570), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 122/223 (54%), Positives = 146/223 (65%), Gaps = 16/223 (7%)

Query: 79  FLLGWLALAAALWSPVDTMGTTSFAMHMIQHELLMIIAAPLLVLSYPFGTWMWA----WN 134
           F  GWL LAAAL SP+DT G  SFA HM+QHELLMI AAPLL+   P   W+WA    W 
Sbjct: 73  FGSGWLCLAAALLSPIDTAGAASFAAHMVQHELLMIAAAPLLIAGRPVKAWLWALPAGWR 132

Query: 135 RPARHVLGRAGNHPVVARCW----RALIAPLHAWVLHFAALWLWHAPPLFDAALRNDGIH 190
           +P     GR        R W    R L  PL AW++HFAA+W WH P  F+AALR++ +H
Sbjct: 133 KPVGRWFGR--------RAWLSWIRQLSRPLPAWLIHFAAVWGWHVPACFEAALRHEALH 184

Query: 191 ALQHASFLFSALLFWWGVLGELYRDNQRGAAILYLFTTMMHTGALGALFAMSTTVWYAPY 250
             QH SF  SALLFWW VL    R      A+LYLF+TMMHT ALGAL A+S+ +WY  Y
Sbjct: 185 MTQHLSFFVSALLFWWSVLASWRRTQPDHGALLYLFSTMMHTSALGALLALSSRLWYPAY 244

Query: 251 RQQFNSLGLSTLEDQQLGGLIMWVPGGLAYVIAGLMLCAQWLR 293
            +   S G+S LEDQQLGGLIMW+PG L+YVI  L+LCA+WL+
Sbjct: 245 GELPWSYGISPLEDQQLGGLIMWIPGALSYVIVALVLCARWLK 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.138    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 973,580
Number of extensions: 40797
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)