BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0103.p
         (123 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311623|ref|YP_003775715.1| cytochrome c1 protein [Herbaspi...   120   2e-29
gi|300311622|ref|YP_003775714.1| cytochrome c553 [Herbaspirillum...   100   3e-23

>gi|300311623|ref|YP_003775715.1| cytochrome c1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score =  120 bits (302), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 67/85 (78%)

Query: 37  RGQYLLATYGCAACHRIKDVAPGQNQVGPDLRSVADNSYLAGILPNTQQNMVRWLMHPRS 96
           +G+ LLAT+GCAACH I  +APGQ  VGP L  VA  SY+AGILPN+Q N+ RW+MHPR 
Sbjct: 31  QGRRLLATHGCAACHSIPGIAPGQTLVGPPLDQVAKASYVAGILPNSQANLARWIMHPRH 90

Query: 97  LSPGTAMPELGVTEKDARDMAAYLY 121
             P +AMPELG++E++A DMAAYLY
Sbjct: 91  FHPQSAMPELGLSEQEAADMAAYLY 115


>gi|300311622|ref|YP_003775714.1| cytochrome c553 [Herbaspirillum
           seropedicae SmR1]
          Length = 273

 Score =  100 bits (249), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 58/90 (64%)

Query: 31  VTGDQVRGQYLLATYGCAACHRIKDVAPGQNQVGPDLRSVADNSYLAGILPNTQQNMVRW 90
           + GD  RG+  L  Y C +CHRI  V     QVGP L  +A   Y++G LPNT  N+ RW
Sbjct: 175 LAGDIERGRIALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARW 234

Query: 91  LMHPRSLSPGTAMPELGVTEKDARDMAAYL 120
           +MHP+   PG AMPELGV+ +DA DMAAYL
Sbjct: 235 IMHPKRYKPGGAMPELGVSAQDAADMAAYL 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 382,992
Number of extensions: 14137
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 3
Length of query: 123
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 49
Effective length of database: 1,269,480
Effective search space: 62204520
Effective search space used: 62204520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)