BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0101.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313802|ref|YP_003777894.1| hydrolase [Herbaspirillum serop...   133   8e-33

>gi|300313802|ref|YP_003777894.1| hydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 229

 Score =  133 bits (335), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 97/165 (58%), Gaps = 9/165 (5%)

Query: 12  LLNPTNHTLIMIDHQSQMSFATHSIDMVTLRNNVALVAKAAKEFKVSTILTTVAEKSFSG 71
           +L PTN  LI+IDHQ QM+F   S+D   L+NNV  +AK+AK F + T++TTV  + FSG
Sbjct: 9   VLTPTNCQLIIIDHQPQMAFGVQSMDRQALKNNVVALAKSAKVFNIPTVITTVETQGFSG 68

Query: 72  PMFDEIKSVFPNEEVIDRTSMNTWEDPRIADRVNAIGKEKIVLAGLWTSVCIVGPALSAL 131
             + E+ SVFP  ++++RTSMN+W+D ++ D + A GK+KIV+AGLWT VC    AL A+
Sbjct: 69  YTYPELLSVFPEHDILERTSMNSWDDQKVRDALKANGKKKIVVAGLWTEVCNNSFALCAM 128

Query: 132 DQGQRRCLQRSAXRRQRRCLQRSASTRRRTHDPAGRTSDDFAAIP 176
            +G       +           S  T +  HD A +       IP
Sbjct: 129 AEGDYEIYMVA---------DASGGTSKEAHDYAMQRMIQAGVIP 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 531,460
Number of extensions: 17773
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)