BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0099.p
         (156 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309642|ref|YP_003773734.1| aldo/keto reductase [Herbaspiri...    61   5e-11

>gi|300309642|ref|YP_003773734.1| aldo/keto reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score = 60.8 bits (146), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 9/140 (6%)

Query: 1   MEALAEAKAQGLTRLIGVSNFTIAHLQQAIAVVGAQEIATQQIEIHPFLQNRKVVEF--- 57
           +E +    +QG     GVSNF    +   +     +     Q+    +  +R+ +E+   
Sbjct: 125 IEGMETLVSQGKIGGWGVSNFDTDDIDDLLEEPHGEHYLCNQVL---YNLSRRGIEYDLL 181

Query: 58  --ARSQGIHLTAYMPLAYGKVMADPTIIEIAGAHQANPAQIALAWSLQQ-GFATIPSSTK 114
             A+   I + AY P+  G+++  P +  +A AH+  PAQIALAW L+Q G   IP +  
Sbjct: 182 PQAQQAHIAVMAYSPIEQGRILKHPALTALAQAHRVTPAQIALAWVLRQPGVVAIPKAAD 241

Query: 115 RANLESNLAAQNIRLSDAEM 134
            A++++N A+ +I LS A++
Sbjct: 242 VAHVQANRASLDISLSAADL 261


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 465,358
Number of extensions: 16898
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,250,540
Effective search space: 97542120
Effective search space used: 97542120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)