BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0097.p
         (199 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310486|ref|YP_003774578.1| major facilitator superfamily p...   348   2e-97
gi|300310608|ref|YP_003774700.1| major facilitator superfamily p...    69   2e-13

>gi|300310486|ref|YP_003774578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score =  348 bits (893), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 167/195 (85%), Positives = 185/195 (94%)

Query: 4   RNPLAIAFDALRQAMKVRDFWLLFFSFFVCGMSTNGYIGTQFIAMCNDYGISEVGGASIL 63
           RNPL IA DALR ++++ DFWLLF SFFVCG+STNGYIGTQFIAMCNDYGI+EV  ASIL
Sbjct: 223 RNPLFIALDALRTSVRMPDFWLLFASFFVCGLSTNGYIGTQFIAMCNDYGINEVSSASIL 282

Query: 64  AAMGMLDLVGTTLSGWLSDRFNPRVLLFWYYGLRGIALIFLPYAFGLDYFGLTVFAIFYG 123
           AAMGMLDLVGTTLSGWLSDR+NPRVLLFWYYGLRG+ALIFLPYAFGL Y+GLT+FAIFYG
Sbjct: 283 AAMGMLDLVGTTLSGWLSDRYNPRVLLFWYYGLRGLALIFLPYAFGLQYYGLTIFAIFYG 342

Query: 124 LDWIATVPPTVRLANDVFGRLAAPIVFGWIVAGHQLGAAAATTISGFMRANLGDYTASSM 183
           LDWIATVPPTVRLANDVFGRLAAPIVFGWIVAGHQLGAA ATT++G++RA+LG+YT SS+
Sbjct: 343 LDWIATVPPTVRLANDVFGRLAAPIVFGWIVAGHQLGAATATTLAGYLRASLGNYTLSSI 402

Query: 184 LMGVACLVGAVMVLR 198
           LMGVACLVGAV+VLR
Sbjct: 403 LMGVACLVGAVLVLR 417


>gi|300310608|ref|YP_003774700.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 10/172 (5%)

Query: 12  DALRQAMKVRDFWLLFFSFFVCGMSTNGYIGTQ---FIAMCN-DYGISEVGGASILAAMG 67
           + + QA   R + LL   FF CG     +I T    ++ +C+   G++    A+ LA +G
Sbjct: 207 EVIAQATAHRGYQLLTLGFFACGFQL-AFIATHLPGYLELCHMPMGLA----ATALALIG 261

Query: 68  MLDLVGTTLSGWLSDRFNPRVLLFWYYGLRGIALIFLPYAFGLDYFGLTVFAIFYGLDWI 127
           + ++ G+   GWL  R+ P+ +L W Y +R  A I L +        +T+FA   GL W+
Sbjct: 262 LFNMAGSWACGWLGGRYRPQRVLGWLYLVRSTA-IGLFFIAPKSSQSVTLFAAVMGLTWL 320

Query: 128 ATVPPTVRLANDVFGRLAAPIVFGWIVAGHQLGAAAATTISGFMRANLGDYT 179
            TVP T  L   +FG      +FG     HQ+G+     + G+M    G Y+
Sbjct: 321 GTVPLTTGLVARLFGTAHMGTLFGVCFLSHQVGSFLGAWLGGWMLEVTGSYS 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.145    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 648,952
Number of extensions: 27146
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 199
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,236,335
Effective search space: 145887530
Effective search space used: 145887530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)