BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0095.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309886|ref|YP_003773978.1| divalent heavy-metal cations tr...   209   3e-55

>gi|300309886|ref|YP_003773978.1| divalent heavy-metal cations
           transporter protein [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  209 bits (531), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/259 (51%), Positives = 177/259 (68%), Gaps = 4/259 (1%)

Query: 47  WLQGTPPLRGALLGGAAAALATASGTIPVALSKGFSRCASASFLGFGAGVMLAASTFSLI 106
           W    P +  A  GG AAA ATA+GT+P+  S+ FS   +    GFGAGVMLAAS FSLI
Sbjct: 54  WSVRDPRIWHAYCGGMAAAAATAAGTLPLFFSRRFSARMADCCTGFGAGVMLAASVFSLI 113

Query: 107 IPALEAMQSHGVPRWESSAQVALGVLLGAGFVLVLDRWGSIALPGLHSDTDTSVTRKAWL 166
           +PAL+++++ G+ + ++S  +   V+ GA  VL+L R G     G       +  R+ WL
Sbjct: 114 LPALQSVRTAGMGQGQASLVIGASVVAGALLVLLLQRAGQ----GHDDAARQAALRRVWL 169

Query: 167 FVLAVALHNIPEGMAIGVGYAGIAHSQANTLAAGIAIQDIPEGLVVATALRSVGYRKGMA 226
           FVL V LHN+PEG+A+GV Y G+   QA+ L  GIA+QDIPEG++VATALR +GY +  A
Sbjct: 170 FVLTVGLHNLPEGLAVGVAYGGVPAEQASVLTFGIALQDIPEGMIVATALRGIGYSRADA 229

Query: 227 ISMGVLSGVVEPIAAVLAAAVVSTSELWLPWGLAGAAGAMLFVIAHDVIPEAHRDGHHLA 286
           I  G+LSG+VEP+AAV  AAVV+ S   LPW L GAAGAMLFV+AH+VIP+ HR    LA
Sbjct: 230 IGCGILSGLVEPLAAVAGAAVVALSSALLPWALGGAAGAMLFVLAHEVIPDPHRRHDALA 289

Query: 287 CSCSIVGGFILMMLLDTAL 305
            +C ++ GF+LMM+LDTAL
Sbjct: 290 ATCCLIAGFVLMMVLDTAL 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 736,360
Number of extensions: 23835
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)