BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0093.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309885|ref|YP_003773977.1| Mn-containing catalase [Herbasp...   486   e-138

>gi|300309885|ref|YP_003773977.1| Mn-containing catalase
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score =  486 bits (1251), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/304 (79%), Positives = 261/304 (85%), Gaps = 4/304 (1%)

Query: 1   MFAHNKRLQYTVRVSETNPGLANLMLEQFGGPQGELAAACRYFTQALSEDDPGRKDMLFD 60
           MFAHNKRLQYTVRV+  NPGLANLMLEQFGGPQGELAAACRYFTQAL+EDDPGRKDMLFD
Sbjct: 1   MFAHNKRLQYTVRVAAPNPGLANLMLEQFGGPQGELAAACRYFTQALAEDDPGRKDMLFD 60

Query: 61  IATEELSHLEVIGNIVVMLNKGAKGRLAEGVEEEAEIYRSITGAGNDSHLTQVLYGGGAP 120
           IATEELSHLEVIGNIVVMLNKGAKG+LAEGVEEE  +Y+ IT AGNDSH+TQVLYG GAP
Sbjct: 61  IATEELSHLEVIGNIVVMLNKGAKGKLAEGVEEEGLLYKDITAAGNDSHVTQVLYGAGAP 120

Query: 121 LVNSAGVPWSAAYIDTIGEPTADLRSNIAAEARAKIVYERLINLTSDPGVKEALGFLMTR 180
           LVNSAGVPWSAAYIDTIGEPTADLRSNIAAEARAKIVYERLINLT DPGVKEALGFLMTR
Sbjct: 121 LVNSAGVPWSAAYIDTIGEPTADLRSNIAAEARAKIVYERLINLTDDPGVKEALGFLMTR 180

Query: 181 EIAHQKSFEKALYAISPNFPPGKAAGDPRFASVYYNLSRGPGEERGPWNQGEKWDFVSDP 240
           EIAHQKSFEKALYAI PNFPPGK  GDPRF+ VY NLS+G GE+ GPWN G++W+ +   
Sbjct: 181 EIAHQKSFEKALYAIRPNFPPGKMPGDPRFSRVYVNLSQGLGEQTGPWNDGKQWERLDGA 240

Query: 241 DEQLNVDGKGGDATVELGSEESAVVAQMAVRTASAQTGDPLTGAELGMGPGGTDAEKVAA 300
           D    VDG  G A+VEL ++E AV+ Q+A RTASAQ G+PLTGAEL    G  D E    
Sbjct: 241 DALTPVDGGDGQASVELSADEQAVLDQLAARTASAQDGEPLTGAEL----GSADPEMNLK 296

Query: 301 AKEP 304
           AK+P
Sbjct: 297 AKKP 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,021,742
Number of extensions: 45789
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 130 (54.7 bits)