BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0090.p (243 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 458 e-130 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 239 2e-64 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 229 2e-61 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 229 2e-61 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 221 3e-59 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 458 bits (1178), Expect = e-130, Method: Compositional matrix adjust. Identities = 228/243 (93%), Positives = 236/243 (97%), Gaps = 1/243 (0%) Query: 1 MLTISNLQAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGTVTL 60 MLTISNL AAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGG VTL Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 61 GGKDVTGQDSHKIARAGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 GGK++TG DSHKIAR GLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 Query: 121 ALELFPRLKERQTQLAGTLSGGEQQMLAVTPRAVMLNPEVILLDEPSMGLAPILVEEVFR 180 ALELFPRLKERQ+QLAGTLSGGEQQMLA+ RAVMLNPEVILLDEPSMGLAPILV+EVFR Sbjct: 121 ALELFPRLKERQSQLAGTLSGGEQQMLAMA-RAVMLNPEVILLDEPSMGLAPILVDEVFR 179 Query: 181 IILRLKEQGITMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVQAAYLGGG 240 II+RLKEQG+TMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAV+AAYLGGG Sbjct: 180 IIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGG 239 Query: 241 AAH 243 A H Sbjct: 240 AHH 242 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 239 bits (609), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/243 (52%), Positives = 169/243 (69%), Gaps = 4/243 (1%) Query: 1 MLTISNLQAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGTVTL 60 +L + +L AAYGKVEVL GI + V +GK+VT+IG NGAGKTT + AI G++ P G + Sbjct: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVL-PSRGAMAF 63 Query: 61 GGKDVTGQDSHKIARAGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 G + ++ AG+ PE R +FA M++ DNL+LGAF R+ + D A LE Sbjct: 64 DGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTG--QRDHAATLEE 121 Query: 121 ALELFPRLKERQTQLAGTLSGGEQQMLAVTPRAVMLNPEVILLDEPSMGLAPILVEEVFR 180 LFPRL+ER++Q AGTLSGGE+QMLAV RA+M P +++LDEPS+GLAP++V E+FR Sbjct: 122 VYTLFPRLRERRSQQAGTLSGGERQMLAVG-RALMAKPRLLMLDEPSLGLAPLIVREIFR 180 Query: 181 IILRLKEQGITMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVQAAYLGGG 240 II L+ +G+++LLVEQ A AAL VADYGYVLENG I +HGPA +L +D V AYLG Sbjct: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS 240 Query: 241 AAH 243 H Sbjct: 241 GKH 243 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 229 bits (584), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 120/242 (49%), Positives = 172/242 (71%), Gaps = 7/242 (2%) Query: 1 MLTISNLQAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPK--GGTV 58 +L + L AYG ++ + GI +EV +G++VTLIG+NGAGKTTT++AI+G + G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 59 TLGGKDVTGQDSHKIARAGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDL 118 G+ + G+ S ++ + LA PEGR VF MS+ +NLL+GA+ + KG IA D+ Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYT----SDDKGQIAADI 120 Query: 119 ERALELFPRLKERQTQLAGTLSGGEQQMLAVTPRAVMLNPEVILLDEPSMGLAPILVEEV 178 ++ +FPRLKER Q+AGTLSGGEQQMLA+ RA+M +P+++LLDEPSMGL+PI+VE++ Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMA-RALMSHPKLLLLDEPSMGLSPIMVEKI 179 Query: 179 FRIILRLKEQGITMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVQAAYLG 238 F +I + QGIT+LLVEQ A AL A GYV+E+G I++ G A ++ +DP V+AAYLG Sbjct: 180 FEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Query: 239 GG 240 G Sbjct: 240 EG 241 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 229 bits (584), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 120/242 (49%), Positives = 172/242 (71%), Gaps = 7/242 (2%) Query: 1 MLTISNLQAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPK--GGTV 58 +L + L AYG ++ + GI +EV +G++VTLIG+NGAGKTTT++AI+G + G + Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 59 TLGGKDVTGQDSHKIARAGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDL 118 G+ + G+ S ++ + LA PEGR VF MS+ +NLL+GA+ + KG IA D+ Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYT----SDDKGQIAADI 120 Query: 119 ERALELFPRLKERQTQLAGTLSGGEQQMLAVTPRAVMLNPEVILLDEPSMGLAPILVEEV 178 ++ +FPRLKER Q+AGTLSGGEQQMLA+ RA+M +P+++LLDEPSMGL+PI+VE++ Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMA-RALMSHPKLLLLDEPSMGLSPIMVEKI 179 Query: 179 FRIILRLKEQGITMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVQAAYLG 238 F +I + QGIT+LLVEQ A AL A GYV+E+G I++ G A ++ +DP V+AAYLG Sbjct: 180 FEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Query: 239 GG 240 G Sbjct: 240 EG 241 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 221 bits (564), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 117/240 (48%), Positives = 158/240 (65%), Gaps = 6/240 (2%) Query: 1 MLTISNLQAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGTVTL 60 ML + YG +E LHG+S+ V KG++VTLIG+NGAGKTT + + G + G V Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 61 GGKDVTGQDSHKIARAGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 G+D+T +H+I R GLA SPEGRRVF +++V +NL +GAF A +G +E Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQG-----IEY 116 Query: 121 ALELFPRLKERQTQLAGTLSGGEQQMLAVTPRAVMLNPEVILLDEPSMGLAPILVEEVFR 180 LFPRLKER Q AGT+SGGEQQMLA+ RA+M P ++LLDEP++GLAP+++ ++F Sbjct: 117 VFGLFPRLKERAAQRAGTMSGGEQQMLAI-GRALMSKPRLLLLDEPTLGLAPLVIAQIFD 175 Query: 181 IILRLKEQGITMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVQAAYLGGG 240 II ++E G+T+ LVEQ A AL VAD GYVLENG + + L + V+ AYLG G Sbjct: 176 IIRTIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 799,017 Number of extensions: 35008 Number of successful extensions: 505 Number of sequences better than 1.0e-08: 116 Number of HSP's gapped: 338 Number of HSP's successfully gapped: 129 Length of query: 243 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 160 Effective length of database: 1,226,865 Effective search space: 196298400 Effective search space used: 196298400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)