BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0088.p (305 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311114|ref|YP_003775206.1| branched-chain amino acid ABC t... 542 e-155 gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC t... 143 2e-35 gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC t... 143 2e-35 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 139 2e-34 gi|300312237|ref|YP_003776329.1| amino acid ABC transporter perm... 111 6e-26 >gi|300311114|ref|YP_003775206.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 542 bits (1396), Expect = e-155, Method: Compositional matrix adjust. Identities = 285/296 (96%), Positives = 293/296 (98%) Query: 10 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGSLVGLSVVGNIHGG 69 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLG+LVGLSVVGNIHGG Sbjct: 1 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVGNIHGG 60 Query: 70 PYLNYWLMIPIVLVFGALQGVFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 129 PYLNYWLMIPIVLVFGALQG+FVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG Sbjct: 61 PYLNYWLMIPIVLVFGALQGMFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKNVAENIWG 120 Query: 130 KDDLPFPSPLSGVPFQIFGANVQPMQVLVVVGALAIMLAVEIFNRKSIYGKAVVATSNDR 189 KDDLPFPSP+SG PFQIFGANVQPMQVLVVVGAL IM AVE+FNRKSIYGKAVVATSNDR Sbjct: 121 KDDLPFPSPISGAPFQIFGANVQPMQVLVVVGALLIMAAVELFNRKSIYGKAVVATSNDR 180 Query: 190 DAAGLMGINTSVVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT 249 DAAGLMGINTS+VITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT Sbjct: 181 DAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIGGLT 240 Query: 250 SGMGAIVGGLILGIAETVTGFYISTGYKEVPGLLLLLLVLAVKPAGLFGKTAIKKV 305 SGMGAIVGGLILG+AET+TGFYISTGYKEVPGL+LLLLVLAVKPAGLFGKTAIKKV Sbjct: 241 SGMGAIVGGLILGVAETLTGFYISTGYKEVPGLVLLLLVLAVKPAGLFGKTAIKKV 296 >gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 309 Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/313 (30%), Positives = 181/313 (57%), Gaps = 23/313 (7%) Query: 10 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGSLVGLSVVGNIH-- 67 MDI +Q + +G+ LG +YA+IA GY + + +NF G+ LM+G++VGLS++ + Sbjct: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60 Query: 68 --GGPYLNYWLM-----IPIVLVFGALQGVFVEWIGVRPAIKIKSEFGWIMSTIALAIIF 120 G P + ++ IP+ +V L +E I RP ++ +++ I ++I+ Sbjct: 61 APGLPGIVQLVIAIVGAIPVCIVVSLL----IERIAYRP-LRNAPRLAPLITAIGVSILL 115 Query: 121 KNVAENIWGKDDLPFPSPLSGVPFQIFGANVQPMQVLVVVGALAIMLAVEIFNRKSIYGK 180 + +A IWG+ LPFP + P I GA + P Q++++ A+ M+ + + K+ G+ Sbjct: 116 QTLAMMIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLLALAVLAMVGLVLIVEKTKMGR 175 Query: 181 AVVATSNDRDAAGLMGINTSVVITFSYALSSATAAFAGVL-VAPLTLTGATMGAALGLKA 239 A+ AT+ + AGLMG++ + VI ++A+ + AA AGV+ A + MG GLKA Sbjct: 176 AMRATAENPRIAGLMGVDANKVIVVTFAIGAGLAAIAGVMWAANYSTAQFAMGFVPGLKA 235 Query: 240 FAVAIIGGLTSGMGAIVGGLILGIAET--------VTGFYISTGYKEVPGLLLLLLVLAV 291 F+ A++GG+ + GA++GG++LG+ E+ +TG ++ + Y+++ ++L++VL + Sbjct: 236 FSAAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTL 295 Query: 292 KPAGLFGKTAIKK 304 +P+G+ G+ + Sbjct: 296 RPSGIMGERVADR 308 >gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 309 Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/313 (30%), Positives = 181/313 (57%), Gaps = 23/313 (7%) Query: 10 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGSLVGLSVVGNIH-- 67 MDI +Q + +G+ LG +YA+IA GY + + +NF G+ LM+G++VGLS++ + Sbjct: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60 Query: 68 --GGPYLNYWLM-----IPIVLVFGALQGVFVEWIGVRPAIKIKSEFGWIMSTIALAIIF 120 G P + ++ IP+ +V L +E I RP ++ +++ I ++I+ Sbjct: 61 APGLPGIVQLVIAIVGAIPVCIVVSLL----IERIAYRP-LRNAPRLAPLITAIGVSILL 115 Query: 121 KNVAENIWGKDDLPFPSPLSGVPFQIFGANVQPMQVLVVVGALAIMLAVEIFNRKSIYGK 180 + +A IWG+ LPFP + P I GA + P Q++++ A+ M+ + + K+ G+ Sbjct: 116 QTLAMMIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLLALAVLAMVGLVLIVEKTKMGR 175 Query: 181 AVVATSNDRDAAGLMGINTSVVITFSYALSSATAAFAGVL-VAPLTLTGATMGAALGLKA 239 A+ AT+ + AGLMG++ + VI ++A+ + AA AGV+ A + MG GLKA Sbjct: 176 AMRATAENPRIAGLMGVDANKVIVVTFAIGAGLAAIAGVMWAANYSTAQFAMGFVPGLKA 235 Query: 240 FAVAIIGGLTSGMGAIVGGLILGIAET--------VTGFYISTGYKEVPGLLLLLLVLAV 291 F+ A++GG+ + GA++GG++LG+ E+ +TG ++ + Y+++ ++L++VL + Sbjct: 236 FSAAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTL 295 Query: 292 KPAGLFGKTAIKK 304 +P+G+ G+ + Sbjct: 296 RPSGIMGERVADR 308 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/310 (36%), Positives = 177/310 (57%), Gaps = 16/310 (5%) Query: 8 EIMDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGSLVGLSVVGNI- 66 E++ L Q + +G++LG IYA+IA GY + + G +NF GE M+ S VGL + I Sbjct: 3 ELLPQLTQQLVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIG 62 Query: 67 ----HGGPYLNYWLMIPIVLVFGALQGVFVEWIGVRPAIKIKSEFGWIMSTIALAIIFKN 122 + P L +I VLV G L G VE + RP ++ ++S I ++I +N Sbjct: 63 VQSGYPLPLLLGGALIVSVLVTG-LYGWTVERVAYRP-LRGGPRLVPLISAIGMSIFLQN 120 Query: 123 VAENIWGKDDLPFPSPLSG-VPFQIFGANVQ---PMQVLVVVG-ALAIMLAVEIFNRKSI 177 + G D+ P +SG + FQ+ G++ P +V+VG L +M+A+ +F +S Sbjct: 121 YVQIGQGARDMSVPVLISGALEFQM-GSDFTVTIPYSRMVIVGVTLVLMVALTLFIARSR 179 Query: 178 YGKAVVATSNDRDAAGLMGINTSVVITFSYALSSATAAFAGVLVAPLTL--TGATMGAAL 235 G+A A + D A L+GI+T+ VI+F++ L + AA GVL+A LT+ +G Sbjct: 180 MGRACRACAEDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIA-LTIGKLNPYIGFIA 238 Query: 236 GLKAFAVAIIGGLTSGMGAIVGGLILGIAETVTGFYISTGYKEVPGLLLLLLVLAVKPAG 295 G+KAF A++GG+ S GA++GG++LG+AET Y+ + YK+V LL+L+L +P G Sbjct: 239 GIKAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTG 298 Query: 296 LFGKTAIKKV 305 L GK ++KV Sbjct: 299 LLGKPDVEKV 308 >gi|300312237|ref|YP_003776329.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 111 bits (278), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 156/298 (52%), Gaps = 11/298 (3%) Query: 12 ILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGSLVGLSVVGNIHGGPY 71 +L Q + + ++LG +YA+ A G+ L F G +N G MLGS L +V + Sbjct: 1 MLEQQLINALSLGSVYALFALGFTLVFGVLGVINLSHGAIFMLGSYAALLLVEQMA---- 56 Query: 72 LNYWLMIPIVLVFGALQGVFVEWIGVRPAIKIKS-EFGWIMSTIALAIIFKNVAENIWGK 130 L W+ + + +V L G+ ++ + ++P K + +++TI +AI+ N+++ ++G Sbjct: 57 LPLWVALLLAMVATGLLGLIIDVLVLKPLRKRNAPHLIPMIATIGVAIMITNISQGLFGA 116 Query: 131 DDLPFPS---PLSGVPFQIFGANVQPMQVLVVVGALAIMLAVEIFNRKSIYGKAVVATSN 187 ++ FP P V ++ +QV ++V A +M+ + RK+ G+A+ A + Sbjct: 117 ENKRFPQGTIPEESVSLG--NLHITAVQVAIIVIAFVLMVVLLGVMRKTQLGRALRAIAE 174 Query: 188 DRDAAGLMGINTS-VVITFSYALSSATAAFAGVLVAPLTLTGATMGAALGLKAFAVAIIG 246 AA L+GIN + + S+A ++ A ++ MG + K AV I+G Sbjct: 175 SPKAAYLLGINVEGLFLLTSFAAAALGGAAGVLVGVSFNAISPFMGQPMLHKGIAVIILG 234 Query: 247 GLTSGMGAIVGGLILGIAETVTGFYISTGYKEVPGLLLLLLVLAVKPAGLFGKTAIKK 304 G+ GA++GGL LG AE +T YIS+ +++ LL L+L VKP+G+FGK +K Sbjct: 235 GMGDIRGAMIGGLFLGFAEVLTVAYISSDFRDAVAFGLLFLILLVKPSGMFGKVLERK 292 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 808,564 Number of extensions: 30950 Number of successful extensions: 249 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 24 Length of query: 305 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 220 Effective length of database: 1,217,395 Effective search space: 267826900 Effective search space used: 267826900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)