BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0086.p
         (136 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311112|ref|YP_003775204.1| thioesterase [Herbaspirillum se...   170   4e-44
gi|300313596|ref|YP_003777688.1| 4-hydroxybenzoyl-CoA thioestera...    55   2e-09

>gi|300311112|ref|YP_003775204.1| thioesterase [Herbaspirillum
           seropedicae SmR1]
          Length = 141

 Score =  170 bits (431), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 96/130 (73%)

Query: 7   IHTSRMDVRWGDMDAFNHVNNTVYFRYMEQTRIEWLETIGVGLAADGLGPVIVNAHCSFL 66
           ++ SR  +RWGDMDAF HVNNTVYFR+MEQ RIEWLE +     A   GPVIVNAHC+F 
Sbjct: 12  LYLSRQTIRWGDMDAFGHVNNTVYFRFMEQCRIEWLEEVFGPTIAGEEGPVIVNAHCNFR 71

Query: 67  RQLKYPADIEIRMYAQPPGRSSVETTYEIRRVDQPEIIYAEGGAKIVWVNFKQEKSVPLP 126
           RQ+KYPA I + M A   GR+SVETTY IR     +IIYA+G AKIVWV+FK+EKS  LP
Sbjct: 72  RQMKYPARICVEMSAGHLGRTSVETTYIIRDAADEQIIYADGAAKIVWVDFKKEKSTALP 131

Query: 127 ESIRQTLTGL 136
           E +RQ LT L
Sbjct: 132 EQLRQLLTSL 141


>gi|300313596|ref|YP_003777688.1| 4-hydroxybenzoyl-CoA thioesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score = 55.1 bits (131), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 6   LIHTSRMDVRWGDMDAFNHVNNTVYFRYMEQTRIEWLETIGVGLAADG--LGPVIVNAHC 63
            +H   +  RW D D + HVNN VY+ + +     +L   G      G  +G +++   C
Sbjct: 14  FLHFHAIPTRWMDNDVYGHVNNVVYYSWFDTAVNHYLVQQGALDIEHGEVIG-LVIETQC 72

Query: 64  SFLRQLKYPADIEIRMYAQPPGRSSVETTYEIRRVDQPEIIYAEGGAKIVWVNFKQEKSV 123
           ++   + +P  IE+ +     GRSSV     I +  + E   A G    V+V+    + V
Sbjct: 73  NYFASVAFPDLIEVGVRVAHLGRSSVRYELGIFKAGE-ESAAARGHFVHVYVDRASRRPV 131

Query: 124 PLPESIRQTLTGL 136
            LPE++R  L  L
Sbjct: 132 ALPEALRAALMPL 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 443,394
Number of extensions: 17320
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 136
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,260,010
Effective search space: 75600600
Effective search space used: 75600600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)