BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0085.p
         (101 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311111|ref|YP_003775203.1| electron transfer flavoprotein-...   110   2e-26

>gi|300311111|ref|YP_003775203.1| electron transfer
           flavoprotein-ubiquinone oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 558

 Score =  110 bits (275), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/74 (70%), Positives = 59/74 (79%), Gaps = 5/74 (6%)

Query: 27  LAGAIRPARSNGIRRRXELFPNWKELGAPLNTEVTEDRFLFLSASKAYKTPSWMLPACFQ 86
           L+GA+   R+       EL P+WKE GAPLNT VTEDRFLFLSASKAYKTP+W+LP CFQ
Sbjct: 64  LSGAVMDPRA-----LSELIPDWKEQGAPLNTPVTEDRFLFLSASKAYKTPNWLLPTCFQ 118

Query: 87  NHGNYVISLANVXR 100
           NHGNYVISL+NV R
Sbjct: 119 NHGNYVISLSNVTR 132


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 296,443
Number of extensions: 9702
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 1,619,870
Length adjustment: 70
Effective length of query: 31
Effective length of database: 1,288,420
Effective search space: 39941020
Effective search space used: 39941020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)