BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0084.p
         (117 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311111|ref|YP_003775203.1| electron transfer flavoprotein-...   137   2e-34

>gi|300311111|ref|YP_003775203.1| electron transfer
           flavoprotein-ubiquinone oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 558

 Score =  137 bits (346), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 66/69 (95%)

Query: 1   VVHTAGWPLDSGTYGGSFLYHLENNQVAVGYVVGLAYENPYLSPYEEFQRYKTHPEIRKF 60
           VVHTAGWPLD+ TYGGSFLYHLENNQVAVGYVVGLAYENPYLSP+EEFQRYKTHPEIRKF
Sbjct: 242 VVHTAGWPLDNDTYGGSFLYHLENNQVAVGYVVGLAYENPYLSPFEEFQRYKTHPEIRKF 301

Query: 61  FEGGKRYEF 69
           FEGGKR  +
Sbjct: 302 FEGGKRLSY 310



 Score =  112 bits (280), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query: 67  YEFVKNDDNTDRLQINAQNCVHCKTCDIKDPTQNIVWVTPEGGGGPNYSNM 117
           YEFVKN+DNTDRLQINAQNCVHCKTCDIKDPTQNIVWVTPEGGGGPNYS M
Sbjct: 508 YEFVKNEDNTDRLQINAQNCVHCKTCDIKDPTQNIVWVTPEGGGGPNYSGM 558


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 428,004
Number of extensions: 16110
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 117
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,269,480
Effective search space: 54587640
Effective search space used: 54587640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)