BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0079.p
         (692 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311299|ref|YP_003775391.1| phenylalanyl-tRNA synthetase be...   587   e-169
gi|300311298|ref|YP_003775390.1| phenylalanyl-tRNA synthetase su...   497   e-141

>gi|300311299|ref|YP_003775391.1| phenylalanyl-tRNA synthetase beta
           chain protein [Herbaspirillum seropedicae SmR1]
          Length = 808

 Score =  587 bits (1514), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/307 (91%), Positives = 295/307 (96%)

Query: 137 QCVPCSARELKLSEDHGGLLELPDDAPVGQNFRDYFLLNDLKFTIKLTPNKADCLSVLGV 196
           Q + CSARELKLSEDHGGLLELPDDAPVGQNFRDY  LNDLKFTIKLTPNKADCLSVLGV
Sbjct: 121 QGMLCSARELKLSEDHGGLLELPDDAPVGQNFRDYLQLNDLKFTIKLTPNKADCLSVLGV 180

Query: 197 AREVSALTDTPLKQPTFQTVAVNLDEKLPVRISAPDLCGRFAGRVIRGLNAKAATPQWMK 256
           AREVSALT TPLK PTFQ+ AVNLDEKLPVRISAPDLCGRFAGRVIRGLNAKAATPQWMK
Sbjct: 181 AREVSALTGTPLKAPTFQSAAVNLDEKLPVRISAPDLCGRFAGRVIRGLNAKAATPQWMK 240

Query: 257 QRLERSGQRPISALVDISNYVMLELGRPSHVFDLDKIHGSLDVRWGKKGEQIKLLNGNTV 316
           QRLERSGQRPISALVDISNYVMLELGRPSHVFDLDKIHGSLDVRWG+KGE +KLLNGNTV
Sbjct: 241 QRLERSGQRPISALVDISNYVMLELGRPSHVFDLDKIHGSLDVRWGRKGESLKLLNGNTV 300

Query: 317 EVDEWVGVIADDKELESLAGIMGGDATSVSLETTNIYLEAAFWFPQAIQGRARRYNFSTD 376
           EVDEWVGVI+DDKELESLAGIMGGDAT+VSL+TTNIYLEAAFWFPQAIQGRARRYNFSTD
Sbjct: 301 EVDEWVGVISDDKELESLAGIMGGDATAVSLDTTNIYLEAAFWFPQAIQGRARRYNFSTD 360

Query: 377 AAHRFERGVDFATVVEHIERITALLIEICGTPDTKVGPVDDQIVNLPKREPVKVRTARAT 436
           AAHRFERGVDFATVV+HIERITALL+EICGT +T+VGPVDDQIVNLPKR PV++RTARA 
Sbjct: 361 AAHRFERGVDFATVVDHIERITALLLEICGTAETRVGPVDDQIVNLPKRAPVQLRTARAA 420

Query: 437 KVIGVAI 443
           KVIGV I
Sbjct: 421 KVIGVEI 427


>gi|300311298|ref|YP_003775390.1| phenylalanyl-tRNA synthetase
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score =  497 bits (1279), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/284 (84%), Positives = 250/284 (88%), Gaps = 6/284 (2%)

Query: 415 VDDQIVNLPKREPVKVRTARATKVIGVAIXRTARATKV------IGVAKGGIHPVMRSWE 468
           V   I+N+ K +     TAR   +    +     A  +       G   GGIHPVMRSW+
Sbjct: 89  VQGAIINVAKEQIETALTARRDALANAQMQARLNAEAIDVTLPGRGRGVGGIHPVMRSWQ 148

Query: 469 RVEEIFRSIGFDVADGPEIETDWTNFSALNSPENHPARSMQDTFYIEGNDTQGKPLLLRT 528
           RVEEIFRSIGFDVADGPEIETDWTNF+ALNSPENHPARSMQDTFYIEGND+QGKPLLLRT
Sbjct: 149 RVEEIFRSIGFDVADGPEIETDWTNFTALNSPENHPARSMQDTFYIEGNDSQGKPLLLRT 208

Query: 529 HTSPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYL 588
           HTSPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYL
Sbjct: 209 HTSPMQVRYARMNKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYL 268

Query: 589 NFVKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPSVVRNM 648
           NFVKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHP+VVRNM
Sbjct: 269 NFVKAFFETDDLQVRFRPSYFPFTEPSAEIDIAFGSGPLKGRWLEVSGAGQVHPTVVRNM 328

Query: 649 GLDPEQYIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQFN 692
           GLDPEQYIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQFN
Sbjct: 329 GLDPEQYIGFAFGSGLERLTMLRYGINDLRLFYEGDLRFLKQFN 372


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,115,357
Number of extensions: 90724
Number of successful extensions: 229
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 4
Length of query: 692
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 600
Effective length of database: 1,184,250
Effective search space: 710550000
Effective search space used: 710550000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)