BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0078.p
         (808 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311299|ref|YP_003775391.1| phenylalanyl-tRNA synthetase be...  1415   0.0  

>gi|300311299|ref|YP_003775391.1| phenylalanyl-tRNA synthetase beta
           chain protein [Herbaspirillum seropedicae SmR1]
          Length = 808

 Score = 1415 bits (3664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/808 (85%), Positives = 748/808 (92%)

Query: 1   MQFSENWLRTMVNPKMTSDELSHMLTMSGLEVEEVEAVAPPFSNVVVGEVLEVAKHPNAD 60
           MQFSENWLRTMVNP MTSDELSH+LTMSGLEVEEVE VAPPF+NVVVGEVLEVAKHP+AD
Sbjct: 1   MQFSENWLRTMVNPTMTSDELSHLLTMSGLEVEEVEPVAPPFTNVVVGEVLEVAKHPDAD 60

Query: 61  RLNVCQVDVKTGTILNIVCGAPNVRVGMKVPCAMAGAVLPPGADGKPFEIKVGQLRGVES 120
           RLNVC+V+V TGTILNIVCGAPNVR G+KVPCAM GAVLPPG DGKPFEIKVG+LRGVES
Sbjct: 61  RLNVCRVNVHTGTILNIVCGAPNVRAGLKVPCAMVGAVLPPGPDGKPFEIKVGKLRGVES 120

Query: 121 QGMLCSARELKLSEDHGGLLELPDDAPVGQNFRDYFLLNDLKFTIKLTPNKADCLSVLGV 180
           QGMLCSARELKLSEDHGGLLELPDDAPVGQNFRDY  LNDLKFTIKLTPNKADCLSVLGV
Sbjct: 121 QGMLCSARELKLSEDHGGLLELPDDAPVGQNFRDYLQLNDLKFTIKLTPNKADCLSVLGV 180

Query: 181 AREVSALTDTPLKQPTFQTVAVNLDEKLPVRISAPDLCGRFAGRVIRGLNAKAATPQWMK 240
           AREVSALT TPLK PTFQ+ AVNLDEKLPVRISAPDLCGRFAGRVIRGLNAKAATPQWMK
Sbjct: 181 AREVSALTGTPLKAPTFQSAAVNLDEKLPVRISAPDLCGRFAGRVIRGLNAKAATPQWMK 240

Query: 241 QRLERSGQRPISALVDISNYVMLELGRPSHVFDLDKIHGSLDVRWGKKGEQIKLLNGNTV 300
           QRLERSGQRPISALVDISNYVMLELGRPSHVFDLDKIHGSLDVRWG+KGE +KLLNGNTV
Sbjct: 241 QRLERSGQRPISALVDISNYVMLELGRPSHVFDLDKIHGSLDVRWGRKGESLKLLNGNTV 300

Query: 301 EVDEWVGVIADDKELESLAGIMGGDATSVSLETTNIYLEAAFWFPQAIQGRARRYNFSTD 360
           EVDEWVGVI+DDKELESLAGIMGGDAT+VSL+TTNIYLEAAFWFPQAIQGRARRYNFSTD
Sbjct: 301 EVDEWVGVISDDKELESLAGIMGGDATAVSLDTTNIYLEAAFWFPQAIQGRARRYNFSTD 360

Query: 361 AAHRFERGVDFATVVEHIERITALLIEICGTPDTKVGPVDDQIVNLPKREPVKVRTARAT 420
           AAHRFERGVDFATVV+HIERITALL+EICGT +T+VGPVDDQIVNLPKR PV++RTARA 
Sbjct: 361 AAHRFERGVDFATVVDHIERITALLLEICGTAETRVGPVDDQIVNLPKRAPVQLRTARAA 420

Query: 421 KVIGVAITDDMIADIFTRLGLQFTQEPGLFAVTPPSFRFDIEIEEDLIEEIARVYGFENI 480
           KVIGV ITD+M++DIF RLGL F  +PGLF+VTPPS+RFDIEIEEDLIEE+ARVYGFENI
Sbjct: 421 KVIGVEITDEMVSDIFKRLGLSFDYQPGLFSVTPPSYRFDIEIEEDLIEEVARVYGFENI 480

Query: 481 PALPPVAASEMKIAPENIRSLFAIRHLLADLDYQEVVNFSFVESAWEADFAGNQAPIKLL 540
           PALPPVAA  M+IAPEN RSLFAIR LLAD DYQEVVNFSFVESAWEADFAGN  PIKLL
Sbjct: 481 PALPPVAAHAMRIAPENTRSLFAIRRLLADQDYQEVVNFSFVESAWEADFAGNTDPIKLL 540

Query: 541 NPIASQMNVMRSSLIASLVANVRYNINRKANRVRVFEIGAVFHRDAQVQDGPLEVAGYHQ 600
           NPIASQM+VMRSSLIA LVAN RYN+NRKA R+RVFE+GAVF ++A V DGPL VAG+ Q
Sbjct: 541 NPIASQMSVMRSSLIAGLVANARYNVNRKAARIRVFEVGAVFSKNAAVADGPLAVAGFDQ 600

Query: 601 PKRVAGLAYGPVADEQWGQDARNVDFFDVKADLEVLFAPRVLRFARIEHPSLHPGRSAQV 660
           PKRVA LAYGPVA+EQWGQ +RNVD+FDVKADLE LFAPR LRF + EHP+LHPGR+AQV
Sbjct: 601 PKRVAALAYGPVAEEQWGQASRNVDYFDVKADLEALFAPRTLRFVKSEHPALHPGRTAQV 660

Query: 661 ELDGKSIGLIGELHPRLQQKYDLPLAPVVFEIDAAALQQRDVPAYVEISKFPAVTRDLAL 720
            L  + IG+IGELHP+ QQKYDLPLAPVVFE+DA ALQQRD+P Y EISKFPAV+RD+AL
Sbjct: 661 LLGEQVIGVIGELHPKWQQKYDLPLAPVVFEVDADALQQRDLPTYAEISKFPAVSRDIAL 720

Query: 721 VVKQAVQVQELRDIFAAEQQGNPACGIIQAIVLFDEYQGKGLENDEKSLAFRFTLQDTQN 780
           VVKQ+V  Q+L D+FAAE+Q NPAC I+QA+VLFDEYQG+GLE+DEKSLAFR TLQDTQN
Sbjct: 721 VVKQSVGAQQLMDVFAAEKQANPACQILQALVLFDEYQGRGLESDEKSLAFRCTLQDTQN 780

Query: 781 TLQDDTVDAAMAAIVAAATGKLAAKLRA 808
           TLQDD VD AM A+VAAA+ KL A+LRA
Sbjct: 781 TLQDDKVDLAMNALVAAASAKLGARLRA 808


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,391,890
Number of extensions: 99235
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 1
Length of query: 808
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 715
Effective length of database: 1,179,515
Effective search space: 843353225
Effective search space used: 843353225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)