BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0072.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311317|ref|YP_003775409.1| UDP-N-acetyl-d-mannosaminuronic...   125   3e-30

>gi|300311317|ref|YP_003775409.1| UDP-N-acetyl-d-mannosaminuronic
           acid transferase [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  125 bits (315), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 106/213 (49%), Gaps = 16/213 (7%)

Query: 34  TPNVDHVVRLDADPQFRQLYVQADFIFADGMPLVWASRLTGQPLPERVTGADLFVAL-AR 92
           TPN++  V    D  FR   +Q+D   ADGMPLVW +R  G P+ ERV G+ LF AL  +
Sbjct: 29  TPNLNFAVACLDDAAFRHSVIQSDLSIADGMPLVWIARALGLPIKERVAGSSLFQALREQ 88

Query: 93  ACAVQQVP--VYVIGGMPGQEQALHAAFARTYPGLQVDLFCPSMQFDPLGAEGLE----- 145
                Q P  VY  GG PG  QA       T  GL+      S+ +   G   +E     
Sbjct: 89  RMENGQAPLRVYFFGGPPGVAQAADEKLNATPSGLR------SVGYASPGFGSIEEMSPP 142

Query: 146 -ALQRVNQARPGVVFVCLGMPKQERWAIGLRDQLQAGVVMCVGAAMEFALGFKVRAPRWM 204
            AL  +N +R   + V LG  K + W      QL+A VV  +GA + F  G   RAPRW 
Sbjct: 143 QALAHINDSRADFLVVALGAKKGQAWIQHNLVQLRAPVVSHLGAVVNFVAGTVSRAPRWA 202

Query: 205 QKCGLEWTWRLASEPRRLWRRYIVQGARFAGLL 237
           QK GLEW WR+  EP +LWRRY   G     LL
Sbjct: 203 QKTGLEWLWRIKEEP-KLWRRYFDDGMALLRLL 234


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 856,330
Number of extensions: 38162
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)