BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0071.p
         (450 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in...   341   6e-95
gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis su...   139   4e-34
gi|300313506|ref|YP_003777598.1| galactosyltransferase [Herbaspi...   117   3e-27

>gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in
           lipopolysaccharide synthesis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 441

 Score =  341 bits (875), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 184/384 (47%), Positives = 256/384 (66%), Gaps = 4/384 (1%)

Query: 68  WVGTFFVVVLALYLTKSTADFSRVVMTAWLIITPFTLTATSLLCRWWALRLYTAKGQRRT 127
           W+    V+ L  Y+ +    F+  V+ AW+I TP  L   S   +   +R    KG+   
Sbjct: 61  WLAVVAVLGLIGYVCEFYQQFAPGVLAAWVIGTPVGLL-VSQYAQSRVMRDLHTKGEVSK 119

Query: 128 AVFVGFSEDAQRLSESFKTSKMLGISPLGFFDNRQ-GTQRVGAELPRLGGLMDAISWIEK 186
           A+ +G +  A +L+E       L I  +GFFD+R+ G Q  G   P +G + D  +++ K
Sbjct: 120 AIIIGVNPAALKLAERMDNYPALMIKLMGFFDDREIGRQPQGTFTPLMGKMSDVAAYVRK 179

Query: 187 NPVDVVFVALVHARSSDIAPVVDALHDSVASVYFVPDSKMFGLGHMQYAEMAGTPVLVAY 246
           + +++V++++  +    +  ++D L D+ AS+YFVPD  +F L   ++  + G  V+   
Sbjct: 180 HNINMVYISMPISAQPRVLQMIDELQDTTASIYFVPDIYIFNLIQARFDYVGGMAVMAIC 239

Query: 247 ETPFIGVARLLKRFVDVVLSLIILILLSPLLAFIALGVKLSSPGPVMFRQFRYGVGGQQI 306
           ETPF G+   +KR  D++L+ +IL++L P+L  IA+ VK +SPGPV+F+Q RYG+ G++I
Sbjct: 240 ETPFTGMNNFVKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGEEI 299

Query: 307 VVSKFRSMRNDPLPRGEEVRQATVGDVRVTPFGRFLRKTSLDELPQFFNVLEGSMSIVGP 366
           VV KFRSM    L  G  V+QAT GD R+T  G FLRK+SLDELPQF NVL+G MSIVGP
Sbjct: 300 VVYKFRSM--TVLEDGANVQQATKGDARLTKIGGFLRKSSLDELPQFVNVLQGRMSIVGP 357

Query: 367 RPHAVQHNELYRKQVKGYMLRHKVKPGITGWAQINGLRGETDTLDKMQRRVEYDLYYIRN 426
           RPHAV HNELYRKQ+KGYMLRHKVKPGITGWAQ+NGLRGET+TLDKM+ R+E+DL Y+R 
Sbjct: 358 RPHAVAHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRR 417

Query: 427 WSLTLDFKIILRTVLVVLKDRNAY 450
           WSLT D  II++TV +VLK  NAY
Sbjct: 418 WSLTFDLWIIVQTVRLVLKRENAY 441


>gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis sugar
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 461

 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/187 (44%), Positives = 116/187 (62%), Gaps = 3/187 (1%)

Query: 258 KRFVDVVLSLIILILLSPLLAFIALGVKLSSPGPVMFRQFRYGVGGQQIVVSKFRSMRND 317
           KR  D++ S I+L LLSPL+   A+ + L   GPV++RQ R G   +  +V KFRSMR D
Sbjct: 273 KRSFDLITSCIMLPLLSPLMLGAAICIWLEDRGPVLYRQERVGKNNEHFMVLKFRSMRVD 332

Query: 318 PLPRGEEVRQATVGDVRVTPFGRFLRKTSLDELPQFFNVLEGSMSIVGPRPHAVQHNELY 377
               G   + A+ GD R+T  G  +RK  +DELPQ FNVL G MS VGPRP      E +
Sbjct: 333 AEKAGTP-QWASSGDPRITRVGNVMRKYRIDELPQLFNVLRGDMSFVGPRPERPYFVEQF 391

Query: 378 RKQVKGYMLRHKVKPGITGWAQINGLRGETDTLDKMQRRVEYDLYYIRNWSLTLDFKIIL 437
            +++  Y +RH VKPGITGWAQ+    G +   D   ++++YDLYY++N SL LD  I++
Sbjct: 392 AREITFYNVRHCVKPGITGWAQVRYKYGASK--DDAVQKLQYDLYYVKNNSLFLDVLILI 449

Query: 438 RTVLVVL 444
            T+ VV+
Sbjct: 450 DTLSVVI 456


>gi|300313506|ref|YP_003777598.1| galactosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 186

 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 104/188 (55%), Gaps = 9/188 (4%)

Query: 257 LKRFVDVVLSLIILILLSPLLAFIALGVKLSSPGPVMFRQFRYGVGGQQIVVSKFRSMRN 316
           +KR  D  ++L+  +LL+  +  + L V+L+SPGP ++   R G   +   + KFRSMR 
Sbjct: 1   MKRLFDFAVALVASVLLAIPIVMVMLAVRLTSPGPALYWSERVGRHNRIFKMPKFRSMRI 60

Query: 317 DPLPRGEEVRQATVGDVRVTPFGRFLRKTSLDELPQFFNVLEGSMSIVGPRPHAVQHNEL 376
           D       + +       +TP G FLRK+SLDELPQ +++L G MS+VGPRP     ++L
Sbjct: 61  DTPAVATHLLEDPAQ--WLTPIGSFLRKSSLDELPQLWSILRGDMSLVGPRPALFNQDDL 118

Query: 377 YRKQVKGYMLRHKVKPGITGWAQINGLRGETDTLDKMQRRVEYDLYYIRNWSLTLDFKII 436
              +    +  H++ PG+TGWAQING R E    DK    V  D  Y++  S   D KI+
Sbjct: 119 ITLRTSQGV--HELVPGLTGWAQING-RDELPIPDK----VRLDAEYLQRRSFLFDLKIL 171

Query: 437 LRTVLVVL 444
             T L VL
Sbjct: 172 WMTALKVL 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,315,495
Number of extensions: 51852
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 3
Length of query: 450
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,203,190
Effective search space: 435554780
Effective search space used: 435554780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)