BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0068.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311313|ref|YP_003775405.1| acyltransferase [Herbaspirillum...    90   2e-19

>gi|300311313|ref|YP_003775405.1| acyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 350

 Score = 89.7 bits (221), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 112/220 (50%), Gaps = 14/220 (6%)

Query: 2   SWGKVFSALFYYANYYGIYAHFGQGRDGFDPFSILWSLAVEEQYYLVFPFICVAVLAGTA 61
           SW    + LFY+ANYY ++  F  G        + WSLAVEE +Y VFP + +  L   A
Sbjct: 103 SWSGFLAQLFYFANYYVLF--FDPGHTLPQGTGVFWSLAVEEHFYFVFPALFI-FLMHKA 159

Query: 62  DLRRFSRGLAGSVVLVLAWRVIVHHYGNS--GGGTSDYIYMATDTRIDSILYGAWLA-LI 118
           D R+    L G  +LVL WR     YG    G  + D  Y ATDTRIDSIL+G  LA L 
Sbjct: 160 DRRKIPLYLGGLCLLVLLWR-----YGLVLLGDASMDRTYYATDTRIDSILFGCILATLK 214

Query: 119 LANDTQKHWRRFSASRVVQAVCLLLLLASFVVHHPGFGDTLSYSLQGLALMPLITAICFT 178
           L         + +       + +LLLL S  V    F +TL YS+QGLALMPL       
Sbjct: 215 LPPAVYAALHKPAVRVGGVTLGVLLLLLSLAVRDEVFRETLRYSVQGLALMPLFFYSVAH 274

Query: 179 TSTTSLTKLLETSPMRRFGNWSYSLYLYHPVAIVLAEIWW 218
             +    +LL    ++R G +SYS+YL H   I+L+ + W
Sbjct: 275 PHSFPF-RLLNLRWVQRIGIYSYSIYLSH--EILLSNVDW 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 887,369
Number of extensions: 35325
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)