BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0061.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311309|ref|YP_003775401.1| EPS biosynthesis protein [Herba...   214   9e-57
gi|300312382|ref|YP_003776474.1| chromosome partitioning ATPase ...    58   1e-09

>gi|300311309|ref|YP_003775401.1| EPS biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  214 bits (544), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 109/274 (39%), Positives = 173/274 (63%), Gaps = 3/274 (1%)

Query: 19  MGARFVEAGLLTEEQVARVVELQNSAHIRFGEAAVRLGLLTEQDVQAVLSKQFNYATALT 78
           +GA  ++ G LT E+  R++ LQ    +RFG+AA++LGLLT+ D+   LS+QF+Y   + 
Sbjct: 20  IGAILIDVGKLTPEKAERILRLQRERGMRFGDAAIQLGLLTQADIDQALSRQFDYPYLMK 79

Query: 79  STEGLDKSLDIALAPFGMEAEAIRQIRAELSIRLSDQE--KISLAVVSTAEGEGKSYLAA 136
               + +++  A  PF  + E +R +R++L +R  D +    +L + S A GEG+S+LAA
Sbjct: 80  GESKVSEAVVAAYNPFSAQVETLRALRSQLMLRWFDADLGHKALTITSPARGEGRSFLAA 139

Query: 137 SLALAFSQMGKRTLLIDADMRAPKQHLLFGLENKTGLSTMLAGR-TEISAGGLAEGFPHL 195
           +LA+ FSQ+G+RTLLIDADMR P+QH LFGL+N+ GLS ++AGR T   A         L
Sbjct: 140 NLAVVFSQLGERTLLIDADMRHPRQHELFGLDNRNGLSGVIAGRATAAEAIQRIPALIDL 199

Query: 196 RVLSAGPQPPNPLEILLQPALSNLMRQLANDFDVFIVDTPAAQTSSDAQTISQQVGMCLL 255
            V+  GP PPNP E+L +   + L+++LA  +DV ++DTPA    +D Q ++ + G  L+
Sbjct: 200 SVMPTGPTPPNPQELLGRQPFAQLLQELAPSYDVILIDTPAGGDCADGQMVAGRTGAALM 259

Query: 256 VVRQHHSRLDDLRQTQAQMKTAGAQIIGTVYNQF 289
           VVR++ S +  +R    ++  A   ++G+V N+F
Sbjct: 260 VVRKNVSHMSAVRSLTDRLADARVMVVGSVLNEF 293


>gi|300312382|ref|YP_003776474.1| chromosome partitioning ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 30/206 (14%)

Query: 94  FGMEAEAIRQIRAELSIRLSDQEKISLAVVSTAEGEGKSYLAASLALAFSQMGKRTLLID 153
           F + A A+++      I+L    K  +AV S   G GKS  A +LALA S  G R  ++D
Sbjct: 80  FKIVAHAVQR-----GIKLKSNVKNIIAVASGKGGVGKSTTAVNLALALSAEGARVGILD 134

Query: 154 ADMRAPKQHLLFGLENKTGLSTMLAGRTEISAGGLAEGFPH--LRVLSAG--PQPPNPLE 209
           AD+  P Q ++ G          ++G+ E   G   E   +  L+V S G    P  P+ 
Sbjct: 135 ADIYGPSQPMMMG----------ISGQPETKDGKTMEPLENHGLQVSSIGFMIDPDEPM- 183

Query: 210 ILLQPALSNLMRQLAN-----DFDVFIVDTPAAQTSSDAQ-TISQQVGM--CLLVVRQHH 261
           +   P ++  ++QL +     D D  IVD P    + D Q T+SQ+V +   ++V     
Sbjct: 184 VWRGPIVTQALQQLLDQTNWRDLDYLIVDMPPG--TGDVQLTLSQKVPVTGAVIVTTPQD 241

Query: 262 SRLDDLRQTQAQMKTAGAQIIGTVYN 287
             L D R+     +  G  I+G V N
Sbjct: 242 IALLDARKGLRMFEKVGIPILGIVEN 267


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 891,497
Number of extensions: 34497
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)