BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0060.p
         (460 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis ...   204   1e-53

>gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score =  204 bits (519), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/419 (32%), Positives = 214/419 (51%), Gaps = 18/419 (4%)

Query: 45  PKTYTASSDIYLDYKGNDPINGRLFSPMMDESYMQTQFDMIKSQAVAEKVIDALDLERTA 104
           PKTY A+S + L+YK  DP+ G + +      YM TQ D+I S++ A  V+DAL L +  
Sbjct: 36  PKTYKATSSVVLNYKATDPVTGTMVTAQALPGYMPTQVDIINSRSTALAVVDALKLAQDP 95

Query: 105 AYHEAVERSGEARAHSQLVKRINDHTMVV------TRRSSRVIEVEYAADTAEQSRDLTN 158
           A  E+      A ++SQL  R     +++        R S VI++ Y     +    + N
Sbjct: 96  AVKESY-----ANSNSQLDIRNWLAGILLGNLDAQASRDSSVIDITYKGRDPQTVATMAN 150

Query: 159 AVVRAYIDLNQQISSASARSRREQYNAQLEHLRKEADSIQEKLTKYQQEVGILDPNERND 218
           A   AY  ++ Q+     R     +N Q++ LR+  +  Q KL+KYQQE GI + + R D
Sbjct: 151 AFAEAYQQVSMQLKLDPTRKASAYFNDQIKVLRENYEQAQAKLSKYQQEHGITNLDNRVD 210

Query: 219 LQSRQLGDLMTSLITVQNQQQEAQARKSATDSLVRNGLRIDELPDVAQRPNINDLKSKLS 278
           +++ +L DL T L+  Q    EAQ+R+ A  S   +       PDV   P + +LK+ L+
Sbjct: 211 VENNRLNDLSTQLVAAQGALAEAQSRRQAAGSAQNS-------PDVNANPLVQNLKANLA 263

Query: 279 DVNKRLADIQEVLGARHPKTVALISERDDIAARISREARSSLDAQQIDARRLAMQEQALQ 338
               R A   + LG +HP  +   +E D + A+++    ++  +   +A  L  +E  ++
Sbjct: 264 ASEARFAQAAKRLGTQHPDYLNAKAEVDGLRAQLNAAIAATSASVATNASILQKREAEIR 323

Query: 339 KEVDTQRAKLLEQKQHRDTITSYQRQLDSVERVYNTALAKYDEILMASNINTFDLTVLRV 398
            E + Q+ K+LE  + RD ++   R LDS +R Y     ++ +  +    N  D+++L  
Sbjct: 324 SEFNAQKQKVLELNRTRDELSVLSRDLDSAQRAYELTAQRFTQTNLEGQSNQSDISILAS 383

Query: 399 AEVPSTHSKPLLLQNIAASIVVGLALGFCLALLYELGQRRVRCEDDLVRGIHLPLIGNI 457
           A  P+  S P L  N+  S+ VGL LG   AL  EL  RRVR E DLV GI LP++G I
Sbjct: 384 AMPPTAPSSPRLFINLILSMFVGLVLGVMAALGLELINRRVRSEADLVEGIGLPVLGTI 442


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,136,142
Number of extensions: 40822
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 372
Effective length of database: 1,203,190
Effective search space: 447586680
Effective search space used: 447586680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)