BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0059.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide expo...   180   1e-46
gi|300312073|ref|YP_003776165.1| outer membrane polysaccharide e...    57   2e-09

>gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide export
           protein [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score =  180 bits (457), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 156/251 (62%), Gaps = 7/251 (2%)

Query: 49  SSTVTNTRVGSGDVLRVTVFGQPDLSAEVGVNDKGFLTLPLIGGIDVNGLTTSEISAKVA 108
           S+   +  +G GDV+R+ V+G  DL+ E  +++ G ++ PLIG + + G++T++   K+A
Sbjct: 21  SARAEDIPLGPGDVIRINVYGSQDLTLETRISEAGVISYPLIGEVKIGGMSTAQAERKIA 80

Query: 109 DGLRKGQYLKNPEVSVEVVQLRSQMVSVLGEVSRPGRYPIPGHMSVLELLATAGGLTAQA 168
             L++G YL NP+V++ V    SQM+SVLG+V +PGRYP+ G  +V +++A AGG+    
Sbjct: 81  GMLKQGGYLVNPQVNILVTAPASQMISVLGQVYKPGRYPLDGRRNVADVIALAGGVNPDG 140

Query: 169 DQTVTLLRRKNDNNGSSAEIDVRIPILLGETSTTGRTPLDVELNAGDVVNVNKKKLFYIH 228
             T+T++R + D   +   +D+      G+T+     P    + A DVV V + + FYI+
Sbjct: 141 GDTITIVRTE-DGKVTRTAVDIYAITHNGDTT---ELP---TVGANDVVYVERYQRFYIY 193

Query: 229 GEVNRPGSYPMEQDMNVMRAISLGGGMTQRASQRRIYINREMPEKGVQEIKAKLTDPILP 288
           GEV RPG+Y +E+   V++A++LGGG+T R ++R + + R      +QEI  K  D +LP
Sbjct: 194 GEVQRPGAYKLERGTTVLQALTLGGGLTPRGTERGLKVKRRDANGELQEISVKKDDLLLP 253

Query: 289 GDVVYVNESLF 299
            D+VYV ES F
Sbjct: 254 DDIVYVKESWF 264


>gi|300312073|ref|YP_003776165.1| outer membrane polysaccharide
           export protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 44  TLALPSSTV-TNTRVGSGDVLRVTVFGQPDLSAEVGVNDKGFLTLPLIGGIDVNGLTTSE 102
           T ++P++ V +  R+G GD L V V+  P++S  V V   G  + PL   I+ +G T  E
Sbjct: 30  TASVPAAPVNSEYRIGPGDNLNVIVWRNPEVSLVVPVRPDGKFSTPLANDIEASGKTPKE 89

Query: 103 ISAKVADGLRKGQYLKNPEVSVEVV---QLRSQMVSVLGEVSRPGRYPIPGHMSVLELLA 159
           + A++A  L    Y+ +P V+V V     + S  + V+G+ ++P   P    MS+L+++ 
Sbjct: 90  VGAEIAKAL--SAYITDPVVTVVVTGFSGIYSDQIRVIGQAAKPQALPYRKEMSLLDVVI 147

Query: 160 TAGGLTAQADQTVTLLRRKNDNNGSSAEIDVRIPILLGETSTTGRTPLDVELNAGDVV 217
             GG T  A      + R  D  G   +I VR+  L+ +    G    ++ +  GD++
Sbjct: 148 AVGGTTEFAAGNRASVIRLVD--GKQTKIAVRLDDLMKD----GDISANLAMRPGDIL 199


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 866,240
Number of extensions: 33723
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)