BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0057.p
         (385 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311329|ref|YP_003775421.1| glycerate kinase [Herbaspirillu...   461   e-131

>gi|300311329|ref|YP_003775421.1| glycerate kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 387

 Score =  461 bits (1185), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/377 (71%), Positives = 304/377 (80%), Gaps = 5/377 (1%)

Query: 7   PVVVIAPDSFKGSLSAQEVAEAIGAGVHAAAPNAIVRLCPIADGGEGTLDALLHAGGEVQ 66
           PVVVIAPDSFKGSLSA++VA AIGAG+ AA P+A +RL PIADGGEGTLDAL+HAGGE  
Sbjct: 11  PVVVIAPDSFKGSLSAEDVARAIGAGIQAAIPDAEIRLRPIADGGEGTLDALMHAGGERF 70

Query: 67  RLQVRGAAGTLRDAAAGILSDGSAVIESAEIVGLTDSAGTAVAVENRSTLGIGDALLGLL 126
            +  R AAG + +A  GIL DGSAV+ESA IVGLTD+AGTAVAVE RSTLG+GDA+  LL
Sbjct: 71  AVACRNAAGQMTEALVGILKDGSAVVESAAIVGLTDTAGTAVAVERRSTLGVGDAIKALL 130

Query: 127 DSGARRFLIALGGSSTNDGGIGMLVALGLKLYDAAGKELEPLPSQLARLARVDVGGLDPR 186
           D GAR FL+ALGGSSTNDGG G+L ALG+  YDAAG E+ P P++L R+ RVD  GLD R
Sbjct: 131 DRGARSFLVALGGSSTNDGGAGLLAALGVVFYDAAGVEVAPAPAELHRVVRVDASGLDAR 190

Query: 187 LKDIHIVAMSDVDNPLCGDKGATAVFGPQKGVAAEQIKPLDALLGRFASLFEQASGRSAA 246
           +K+ H VAMSDVDNPLCG +GATAVFGPQKGV  +Q+ PLD  L  FA + E+A GR AA
Sbjct: 191 VKEAHFVAMSDVDNPLCGAEGATAVFGPQKGVQPDQVAPLDQTLAHFAQVLEEALGRQAA 250

Query: 247 NLPGAGAAGGLGYALLMLGAEFQSGAQTVADYIGLDAALKDADWLITGEGRSDAQTLHGK 306
            LPGAGAAGGLGYALLMLGA+F+SGAQTVAD+IGLD AL  ADWLITGEGRSDAQTLHGK
Sbjct: 251 TLPGAGAAGGLGYALLMLGAQFRSGAQTVADHIGLDQALTGADWLITGEGRSDAQTLHGK 310

Query: 307 APFIAAQGPPSTRARQAGVQTSLLSGGIDRSALGRLQTSFSGCFSITFGPTTLDKAIADA 366
           APFIA+Q     RARQ GV  +LLSGGIDR +L +LQTSFSGCFSI FGP  L  AIA A
Sbjct: 311 APFIASQ-----RARQLGVPATLLSGGIDRHSLAQLQTSFSGCFSIVFGPGALQDAIAQA 365

Query: 367 AGLLRDSAEQMTRLWLS 383
             LL+ SAEQ+ RLW S
Sbjct: 366 PQLLQASAEQLARLWQS 382


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,088,318
Number of extensions: 42318
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,207,925
Effective search space: 359961650
Effective search space used: 359961650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)