BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0052.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312443|ref|YP_003776535.1| FeS cluster assembly scaffold p...   250   3e-68
gi|300312138|ref|YP_003776230.1| Fe-S cluster formation NifU fam...   212   8e-57

>gi|300312443|ref|YP_003776535.1| FeS cluster assembly scaffold
           protein [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score =  250 bits (639), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/143 (89%), Positives = 130/143 (90%), Gaps = 11/143 (7%)

Query: 1   MSYSEKVLDHYENPRNVGAFEKGDETVGTGMVGAPACGDVMKLQIKVGAEKKPPKKVGAD 60
           MSYSEKVLDHYENPRNVGAFEKGDETVGTGMVGAPACGDVMKLQIKVGA          D
Sbjct: 1   MSYSEKVLDHYENPRNVGAFEKGDETVGTGMVGAPACGDVMKLQIKVGA----------D 50

Query: 61  GVILDAKFKTYGCGSAIASSSLVTEWVKGKTLDQALSIKNTQIAEELALPPVKIHCSILA 120
           GVI DAKFKTYGCGSAIASSSLVTEWVKGKTLD+ALSIKNTQIAEELALPPVKIHCSILA
Sbjct: 51  GVIQDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILA 110

Query: 121 EDAIKAAVQDYKAKHGSVEQKVA 143
           EDAIKAAVQDYKAKHG+ EQK A
Sbjct: 111 EDAIKAAVQDYKAKHGA-EQKAA 132


>gi|300312138|ref|YP_003776230.1| Fe-S cluster formation NifU family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 149

 Score =  212 bits (540), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 118/140 (84%), Gaps = 10/140 (7%)

Query: 1   MSYSEKVLDHYENPRNVGAFEKGDETVGTGMVGAPACGDVMKLQIKVGAEKKPPKKVGAD 60
           M+YS+K++DHYENPRNVG+F+K D +V TGMVGAPACGDVMKLQIKV            +
Sbjct: 1   MAYSDKLMDHYENPRNVGSFDKDDTSVATGMVGAPACGDVMKLQIKVDH----------N 50

Query: 61  GVILDAKFKTYGCGSAIASSSLVTEWVKGKTLDQALSIKNTQIAEELALPPVKIHCSILA 120
           G+I DAKFKTYGCGSAIASSSLVTEW+KG+TLDQAL IKNT IA+ELALPPVKIHCSILA
Sbjct: 51  GIIEDAKFKTYGCGSAIASSSLVTEWLKGRTLDQALDIKNTAIADELALPPVKIHCSILA 110

Query: 121 EDAIKAAVQDYKAKHGSVEQ 140
           EDAIKAAV DY+++H +  +
Sbjct: 111 EDAIKAAVADYRSRHDAAPE 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 436,690
Number of extensions: 16721
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)