BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0049.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312440|ref|YP_003776532.1| threonine efflux protein [Herba...   301   4e-83
gi|300311201|ref|YP_003775293.1| threonine efflux protein [Herba...    69   4e-13
gi|300314064|ref|YP_003778156.1| threonine efflux protein [Herba...    61   6e-11

>gi|300312440|ref|YP_003776532.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  301 bits (770), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 158/208 (75%), Positives = 179/208 (86%), Gaps = 2/208 (0%)

Query: 1   MPDVFLFLAAAMMLTLAPGPDNIYVLTRGIAQGRKAGLVAALGFSSGLFFHTLLAVLGFA 60
           MPD+ LFL AAM LTLAPGPDN+YVLTRGIAQGRKAGLVAA GF SGL FHTLLAVLGFA
Sbjct: 1   MPDLILFLLAAMTLTLAPGPDNLYVLTRGIAQGRKAGLVAAAGFCSGLVFHTLLAVLGFA 60

Query: 61  AIIKAYPAAYHALQYAGAAYLVYLGIRTLRSAASMSMDAT--MTPVSLGLSRIYWQSVIA 118
           A+IKAYP AYHALQYAGAAYL YLG+RTLRSA++    A       ++ L RIYWQSV+A
Sbjct: 61  ALIKAYPPAYHALQYAGAAYLAYLGVRTLRSASAGLALAADGQGAAAVPLRRIYWQSVLA 120

Query: 119 NILNPKVTLFFIAFLPQFVNVQAGHVAWQMLLLAVVFILQALAIFSAIAFFSGIVGAYFK 178
           N+LNPKVTLFFIAFLPQFV  +AGH A QML+LA+VFI+QA AIFSAIA FSG VGAYF+
Sbjct: 121 NMLNPKVTLFFIAFLPQFVQREAGHEALQMLVLALVFIVQAFAIFSAIALFSGAVGAYFR 180

Query: 179 RQARAALYLNRLAGCAFVGLGIRIALPE 206
           R+A A+++LNRLAGCAF+GLGIR+ALPE
Sbjct: 181 RRASASVHLNRLAGCAFIGLGIRMALPE 208


>gi|300311201|ref|YP_003775293.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score = 68.6 bits (166), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 13/198 (6%)

Query: 5   FLFLAAAMMLTLAPGPDNIYVLTRGIAQGRKAGLVAALGFSSGLFFHTLLAVLGFAAIIK 64
           F F AAA ++ ++PG   +  ++ G+  G +      LG    L    ++A  G  +++ 
Sbjct: 7   FAFFAAACVIAISPGSGAVLSMSHGLNYGVRRTSATILGLEIALVVILIIAGAGVGSLLV 66

Query: 65  AYPAAYHALQYAGAAYLVYLGIRTLR-----SAASMSMDATMTPVSLGLSRIYWQSV--- 116
           A   A++ ++ AGA YL+YLG    R          ++DA          + +WQ     
Sbjct: 67  ASETAFNVIKVAGALYLIYLGFSQWRARVPSEEQGEALDAANASARAHARQTWWQRCMTG 126

Query: 117 -IANILNPKVTLFFIAFLPQFVNVQAGHVAW-QMLLLAVVFILQALAIFSAIAFFSGIVG 174
            + N  NPK  +F +A LPQF++       W Q+L+LAV  +   L +    AF +  + 
Sbjct: 127 FLTNATNPKGIVFMVAVLPQFID--HDRPLWLQLLVLAVTMVAVDLVVMHGYAFAASRLQ 184

Query: 175 AYFKRQARAALYLNRLAG 192
            +F+ Q +A    NR  G
Sbjct: 185 RFFRSQ-KAIRAQNRFFG 201


>gi|300314064|ref|YP_003778156.1| threonine efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score = 61.2 bits (147), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 3   DVFLFLAAAMMLTLAPGPDNIYVLTRGIAQGRKAGLVAALGFSSGLFFHTLLAVLGFAAI 62
           D++  +AA M+  L PGP    VLT     G + G  A  G   G      LA  G AA+
Sbjct: 12  DIWQLIAATMVFLLLPGPGTFCVLTCAAKGGVRGGFAAQAGLMLGDVVLMFLAAAGVAAL 71

Query: 63  IKAYPAAYHALQYAGAAYLVYLGIRTLRSAASMSMDATMTPVSLGLSRIYWQSVIANILN 122
           + A P  +H LQY GAAYL YLG R L   A      T+ P S      + +  +  + N
Sbjct: 72  LHANPLLFHGLQYLGAAYLAYLGARLLF--ARGEGGGTVVPFSNAAE--FRRGFLVTLFN 127

Query: 123 PKVTLFFIAFLPQFVN 138
           PK  +F++AF P F++
Sbjct: 128 PKAIVFYMAFFPLFLD 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.142    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 488,135
Number of extensions: 14825
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 4
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 128 (53.9 bits)