BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0048.p
         (142 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313991|ref|YP_003778083.1| major facilitator superfamily p...   189   9e-50
gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance...    77   4e-16

>gi|300313991|ref|YP_003778083.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  189 bits (479), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 106/117 (90%)

Query: 1   MAALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGR 60
           +A LTAMGAL+IDMYLPSF+ IA+DLGV +N +QLTL+TFLIG+A+GQMFYGP+SDRFGR
Sbjct: 20  LAGLTAMGALAIDMYLPSFTAIAQDLGVGTNQVQLTLATFLIGVAVGQMFYGPLSDRFGR 79

Query: 61  KPPLYFGICLYVVSSIGCTFAPNLETLLVLRFFQGLGGSSGMVIPRAVVRDKMGADG 117
           KPPL+FGI LY V S+ C FA N+ETL+VLR FQGLGGS+GMVIPRA+VRD+MGA+G
Sbjct: 80  KPPLFFGIALYFVCSLLCIFAQNIETLIVLRLFQGLGGSAGMVIPRAMVRDRMGAEG 136


>gi|300311754|ref|YP_003775846.1| Bcr/CflA family drug resistance
           transporter protein [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score = 77.4 bits (189), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 6/113 (5%)

Query: 3   ALTAMGALSIDMYLPSFSFIAKDLGVASNTIQLTLSTFLIGLALGQMFYGPISDRFGRKP 62
           A  + G L+ID+Y+P+   +A D   ++  IQ +++ +LI  A GQ+ +GP++D +GRK 
Sbjct: 28  AFASAGQLAIDLYVPALPEMAIDYATSAQAIQSSVTGYLIAYAFGQLVFGPLADAYGRKR 87

Query: 63  PLYFGICLYVVSSIGCTF---APNLETLLVLRFFQGLGGSSGMVIPRAVVRDK 112
            L  G+ L+   S+GC     APNLET +  R  QG G ++  ++ +A++ D 
Sbjct: 88  ILALGLGLF---SLGCVLSLAAPNLETFVAARVLQGFGIAATNLLAKAIITDS 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 424,614
Number of extensions: 16451
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 5
Length of query: 142
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 66
Effective length of database: 1,260,010
Effective search space: 83160660
Effective search space used: 83160660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)