BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0046.p
         (188 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312439|ref|YP_003776531.1| molecular chaperone protein [He...   253   7e-69
gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 fami...   209   1e-55
gi|300309950|ref|YP_003774042.1| molecular chaperone protein [He...   155   2e-39

>gi|300312439|ref|YP_003776531.1| molecular chaperone protein
           [Herbaspirillum seropedicae SmR1]
          Length = 621

 Score =  253 bits (646), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 124/131 (94%), Positives = 129/131 (98%)

Query: 1   MVQLKTVAGVKSPVEISAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQ 60
           MVQ+KTVAGVKSPVE+SAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQ
Sbjct: 113 MVQIKTVAGVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQ 172

Query: 61  LAGLNVLRLLNEPTAAAIAYGLDNGSEGIFAVYDLGGGTFDISILKLTKGVFEVLSTGGD 120
           LAGLNVLRLLNEPTAAAIAYGLDN SEG+FAVYDLGGGTFDISILKLT+GVFEVL+TGGD
Sbjct: 173 LAGLNVLRLLNEPTAAAIAYGLDNSSEGVFAVYDLGGGTFDISILKLTRGVFEVLATGGD 232

Query: 121 SALGGDDFDQR 131
           SALGGDDFD R
Sbjct: 233 SALGGDDFDHR 243


>gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 family
           [Herbaspirillum seropedicae SmR1]
          Length = 642

 Score =  209 bits (532), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%)

Query: 1   MVQLKTVAGVKSPVEISAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQ 60
           +VQ+ T AG+K+P+++SA IL  LRQ AE +LG +L GAVITVPAYFDDAQRQATKDAA+
Sbjct: 123 LVQIDTAAGIKTPIDVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDAAR 182

Query: 61  LAGLNVLRLLNEPTAAAIAYGLDNGSEGIFAVYDLGGGTFDISILKLTKGVFEVLSTGGD 120
           LAGLNVLRLLNEPTAAAIAYGLD  +EG+FA+YDLGGGTFDISILKL++GVFEVL+T GD
Sbjct: 183 LAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGTFDISILKLSRGVFEVLATNGD 242

Query: 121 SALGGDDFDQ 130
            ALGGDDFD+
Sbjct: 243 GALGGDDFDR 252


>gi|300309950|ref|YP_003774042.1| molecular chaperone protein
           [Herbaspirillum seropedicae SmR1]
          Length = 646

 Score =  155 bits (393), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 108/139 (77%), Gaps = 8/139 (5%)

Query: 12  SPVEISAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLRLLN 71
           +P +ISA++L  +++TAED LG+++  AVITVPAYF+DAQRQATKDA ++AGL+V R++N
Sbjct: 111 APPQISAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIIN 170

Query: 72  EPTAAAIAYGLDNGSEG--IFAVYDLGGGTFDISILKLT----KGVFEVLSTGGDSALGG 125
           EPTAAA+A+GLD   +G    AVYDLGGGTFD+SI+++     +  FEVLST GD+ LGG
Sbjct: 171 EPTAAALAFGLDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGG 230

Query: 126 DDFDQRGGDSALGGDDFSR 144
           +DFDQR  D  +  D+F +
Sbjct: 231 EDFDQRLIDYII--DEFKK 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 656,332
Number of extensions: 31088
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 3
Length of query: 188
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,241,070
Effective search space: 134035560
Effective search space used: 134035560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)