BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0040.p
         (84 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313993|ref|YP_003778085.1| diguanylate cyclase/phosphodies...    69   9e-14
gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspi...    58   2e-10

>gi|300313993|ref|YP_003778085.1| diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 573

 Score = 68.6 bits (166), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 47/67 (70%)

Query: 1   VQFAENIRNAVAALQIPHEESPFGCVTCSIGVIAVQVDENMSTDTLLRLADVALYQAKAL 60
           +Q AENI  A+  L++PH +SPFG ++ SIGV  +  DE+ + + ++R+AD ALY AK  
Sbjct: 499 LQQAENICQAIFELKLPHADSPFGYISASIGVAVLLPDEHTAPEQMVRIADQALYHAKYQ 558

Query: 61  GRNRVAL 67
           GRNRV L
Sbjct: 559 GRNRVVL 565


>gi|300313782|ref|YP_003777874.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 45/64 (70%)

Query: 4   AENIRNAVAALQIPHEESPFGCVTCSIGVIAVQVDENMSTDTLLRLADVALYQAKALGRN 63
           A+ I +A+ +L+IPHE SPF  +T SIGV ++  + + S + +++ AD ALY+AK  GRN
Sbjct: 412 AKRIISAIQSLKIPHERSPFDILTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRN 471

Query: 64  RVAL 67
           + +L
Sbjct: 472 KHSL 475


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 257,492
Number of extensions: 7990
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 4
Length of query: 84
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 30
Effective length of database: 1,364,180
Effective search space: 40925400
Effective search space used: 40925400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)