BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0039.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 221 4e-59 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 178 5e-46 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 153 2e-38 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 144 6e-36 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 132 2e-32 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 221 bits (564), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 122/283 (43%), Positives = 174/283 (61%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANI 60 MKN++IG RL +GF +L L+ +M +GVWRL IG+ T M + L+KER A +W A I Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 DANGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQR 120 NGVRT AV+KSD+ Q +F+ Q+ R S +QK+++ I AE ++LFD + R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 121 KVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRDVINRNAAIVD 180 Y R I +K GD+A A +T L+ M +Y+ V A Q+ VI++ AA ++ Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 181 EQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVVDRK 240 YRSGR++L+A+G + +++G +W L+ ITRPL +AV VAAGDL++ + + Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 241 DEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGNL 283 DE G+LL L M+ NLL V VR G +TI TAS EIATGNL Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNL 283 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 178 bits (451), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 109/281 (38%), Positives = 164/281 (58%) Query: 3 NMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANIDA 62 NM IG RL LGFAL+L+ +++ IG+WRL + T M+A L+ ERL ++W N+ A Sbjct: 6 NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65 Query: 63 NGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQRKV 122 RTIA+ KS + +F ++A + + QKQ++ L+ + E + LF + RK+ Sbjct: 66 GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125 Query: 123 YNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRDVINRNAAIVDEQ 182 Y R++I K K G+ A+ L+ +P Y + + QR ++ A +D Sbjct: 126 YLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAI 185 Query: 183 YRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVVDRKDE 242 RT+++ + L LL+G++ + L+ GIT+PL RAV + VA GDLS+ + V +DE Sbjct: 186 AAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDE 245 Query: 243 IGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGNL 283 GQLLQ L DM+Q+L V VRSG DTI+TAS+EIA GNL Sbjct: 246 TGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNL 286 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/283 (33%), Positives = 161/283 (56%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANI 60 +K++RIGSRLG GFA+VL +++ +G+WRL+ + +T M+ + L+ ERL S+W + Sbjct: 2 IKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLL 61 Query: 61 DANGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQR 120 RT V+KS + + + F + A + ++ K +++L+ S E +K+F ++ V R Sbjct: 62 LIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVAR 121 Query: 121 KVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRDVINRNAAIVD 180 K + +R++I K+ GD A + + + K + A+ +R I++ +A + Sbjct: 122 KQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQ 181 Query: 181 EQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHVVVDRK 240 + S + ++ + V+ LL G+ + L+ ITRP+ A+ + VAAGDL++ + Sbjct: 182 QDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMGR 241 Query: 241 DEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGNL 283 DE+GQL+ L MS+ L V VR GAD+IA AS EIA GNL Sbjct: 242 DELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNL 284 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 144 bits (364), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 109/284 (38%), Positives = 156/284 (54%), Gaps = 3/284 (1%) Query: 3 NMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQKERLASEWAANIDA 62 NM+IG RL LGFA++L+ ++ + +WRLQ I T M+ L KERL S+W I Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 63 NGVRTIAVIKSDNADHQKFFKDQMAGTVDRTSAVQKQLDELIKSAEGRKLFDSLLVQRKV 122 + RT A+ KS + FF D A ++ QK ++ LI+S + + +F L RK Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 123 YNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRDVINRNAAIVDEQ 182 Y R+ I K K G A L A K Y + + QR I++ AA + Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 183 YRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGDLSTHV---VVDR 239 YR R +++A+ L +++G + + L+ GITRPL +AV+ AVAAGDL+ + + R Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAAR 245 Query: 240 KDEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGNL 283 DE G+L+ LH M+ NL + V +VR G D IATAS EIATGNL Sbjct: 246 GDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNL 289 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 155/293 (52%), Gaps = 20/293 (6%) Query: 1 MKNMRIGSRLGLGFALVLSLLVLMTIIGVWRLQDIGNRTATMIALDLQ-KERLASEWAAN 59 N+ I +RL + F++++ ++ + +G+ RL DI ALDL +R N Sbjct: 3 FNNLSIATRLAIAFSILILVIAGIVALGLARLADINK------ALDLVVNDRYKKIAIIN 56 Query: 60 IDANGVRTIAVIKSDNADHQKFFKD--QMAG---TVDRTSAVQKQL-DEL---IKSAEGR 110 + V +A+ + +Q D Q+A T++ SA +L DEL + + E + Sbjct: 57 TISGKVDDVAI----SLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAK 112 Query: 111 KLFDSLLVQRKVYNDLRNKIIKLKEGGDEAAALAALETELLPAMKEYSARVSAVAAHQRD 170 D + RK Y LR +I KL+ GD+ AA+ + +E++P K Y +++ ++ Q+ Sbjct: 113 AKLDKVTETRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQK 172 Query: 171 VINRNAAIVDEQYRSGRTILIAVGVLALLVGVIASWRLSDGITRPLRRAVQATSAVAAGD 230 +++++ + Y + R I++ GVLA +W +S ITRPL RAV+ VAAGD Sbjct: 173 LMDQSVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGD 232 Query: 231 LSTHVVVDRKDEIGQLLQGLHDMSQNLLKTVREVRSGADTIATASAEIATGNL 283 L+ + DE G+LLQ L M+Q L V EVR G D++ TAS +IATGNL Sbjct: 233 LTAVIAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNL 285 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 644,057 Number of extensions: 20399 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 49 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)