BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0037.p
         (490 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132...   689   0.0  

>gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132
           [Herbaspirillum seropedicae SmR1]
          Length = 574

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/480 (70%), Positives = 388/480 (80%), Gaps = 8/480 (1%)

Query: 13  LNSQEQALHVLNRLAYGPRPGDVAAVEKIGVKRYIDEQLNPERIPLPPDLQSRLDGLATY 72
           L+ QE+ALHVLNRLAYGPRPGD+  VE++GVKRYID+QL+PERIPLP  LQ+ L  L   
Sbjct: 101 LSEQERALHVLNRLAYGPRPGDLEEVERMGVKRYIDQQLHPERIPLPAQLQASLAALPGL 160

Query: 73  QLTTSQLYIAYGPPSFPPNSASTDEKNAARQRAAKEITPQSHAARLWLATESPRQLQEVM 132
           Q+T +QL++ YGPPSF     S +EK AARQRA +E+TPQ H ARL  ATESPRQL+EVM
Sbjct: 161 QMTPAQLFVDYGPPSFD-KEGSKEEKQAARQRAPRELTPQFHMARLLQATESPRQLEEVM 219

Query: 133 TEFWFNHFNVFEGKEWVRYWSADYEKNAIRPNALGNFRQLLGAVTHHPAMLYYLDNWLSS 192
           TEFW NHFNVFEGKEWVRYW  DYEKNAIRP ALGNFR LLGAV HHPAMLYYLDNWLSS
Sbjct: 220 TEFWANHFNVFEGKEWVRYWVGDYEKNAIRPYALGNFRDLLGAVAHHPAMLYYLDNWLSS 279

Query: 193 GAGTPQAKGRFKGLNENYARELMELHTLGVDGGYTQADVISLARILSGWTIDEANMKQGA 252
           GAGT  A+GRFKGLNENYARELMELHTLGVDGGY QADVI+LARILSGWTID   MK GA
Sbjct: 280 GAGTRGARGRFKGLNENYARELMELHTLGVDGGYQQADVITLARILSGWTIDVNAMKAGA 339

Query: 253 DSVNSAGFAFNPQRHDGAAKQFLGRTIAPGGQQEGEQALDMLARNPATARFISTKLVQYF 312
                A F+F  QRHD + K FLG+ +A  G QEGE ALD+LA +PATARFIST+LVQYF
Sbjct: 340 -----APFSFAAQRHDPSPKVFLGKPLAATGYQEGEAALDILANHPATARFISTQLVQYF 394

Query: 313 VSDQADPALVEKLAQRFLASDGDIKTVLRTLFDSPQFWSRRNYQSQFKTPYQYVVSSLRA 372
           VSDQ DPALV+KL+Q FL++ GD++ VL+TLFDSPQFW+R NYQ+QFKTPYQ+VVS+LRA
Sbjct: 395 VSDQPDPALVQKLSQTFLSTHGDLRAVLKTLFDSPQFWARSNYQTQFKTPYQFVVSALRA 454

Query: 373 TATPVVNAKPVSGVLSQFGMPLYGWLTPEGYKFSEEAWLNPDALLRRINFANGLSNGKSP 432
           +  PV NAKPV+G L+QFGMPLYGWLTPEGYK+S+ AWLNPDALLRRINFA  L NGKSP
Sbjct: 455 SDIPVRNAKPVNGALAQFGMPLYGWLTPEGYKYSQAAWLNPDALLRRINFAGNLVNGKSP 514

Query: 433 IARAENTQPAANAEA--VDPVRLIQTLSPLLDQNAVTAIAGAPPNLQVGLILGGPAFMKR 490
           IAR E   P +NA+A  VD  +L++TL P +       I  AP N+Q GLILG P FMKR
Sbjct: 515 IARPEGEAPPSNADARPVDAQQLLRTLGPAVAPQTAAKILAAPENVQAGLILGSPDFMKR 574


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,673,720
Number of extensions: 72907
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,198,455
Effective search space: 480580455
Effective search space used: 480580455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)