BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0018.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate ph...   186   2e-48
gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillu...    65   7e-12

>gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate
           phosphonomutase [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  186 bits (472), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 154/279 (55%), Gaps = 4/279 (1%)

Query: 12  LRDKVNARKGLLVPGAFNALSARVIADLGFEALYITGAGVTNMYFGMPDQGFIGLNELAD 71
            R  V     L V GA NA  A +    GF A+Y++G GV     G+PD G   L+++  
Sbjct: 10  FRKAVQEESPLQVIGAINANHALLAKRAGFRAIYLSGGGVAAGSLGLPDLGISNLDDVLT 69

Query: 72  HTARIRDAVEIPLIVDADTGFG-NALNVRHTIRTLERAGADAVQLEDQVSPKRCGHFSGK 130
              RI D  ++PL+VD DTGFG +A NV  T++++ + GA A+ +EDQV  KRCGH   K
Sbjct: 70  DVRRITDVCDLPLLVDVDTGFGASAFNVARTVKSMIKFGAAAMHIEDQVGAKRCGHRPNK 129

Query: 131 EVISCAEMVGKIHAAVDARSNDGMLIMARTDACSVHGFEDALERAARYSEAGADILFVEA 190
           E++S  EMV +I AAVDAR+++  +IMARTDA +V G + A+ERA    EAGAD++F EA
Sbjct: 130 EIVSKQEMVDRIKAAVDARTDENFVIMARTDALAVEGLDAAIERAVACVEAGADMIFPEA 189

Query: 191 IETADEIRRLPQALDKPQLVNLVIGGKTPIFNADELGGLGYGIVLYANAALQGAVAGMQK 250
           I      ++   A+  P L N+   G TP+F  DEL G   G+VLY  +A +      + 
Sbjct: 190 ITDLAMYKQFANAVKVPILANITEFGSTPLFTVDELKGADVGLVLYPLSAFRAMNKAAEN 249

Query: 251 ALTVLRDNHRLDEDPNFVTPFAERQRLVNKPMFDLLEKK 289
               +R   R     N V     R  L ++  +   E++
Sbjct: 250 VYQAIR---RDGTQKNVVDTMQTRMELYDRIDYHSYEQR 285


>gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillum
           seropedicae SmR1]
          Length = 434

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 24/147 (16%)

Query: 40  GFEALYITG---AGVTNMYFGM-PDQGFIGLNELADHTARI---------------RDAV 80
           G +A+Y++G   AG  N+   M PDQ     N +     RI               +D +
Sbjct: 82  GLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVKRINNTFARADQIQWSEGKDDI 141

Query: 81  EI--PLIVDADTGFGNALNVRHTIRTLERAGADAVQLEDQV-SPKRCGHFSGKEVISCAE 137
           +   P++ DA+ GFG  LN    ++++  AGA  V  EDQ+ S K+CGH  GK ++   E
Sbjct: 142 DFFAPIVADAEAGFGGVLNAFELMKSMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTRE 201

Query: 138 MVGKIHAAVDARSNDG--MLIMARTDA 162
            V K++AA  A    G   L++ARTDA
Sbjct: 202 AVEKLNAARLAADVMGTKTLVIARTDA 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 928,160
Number of extensions: 41124
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)