BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0015.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311598|ref|YP_003775690.1| aconitate hydratase [Herbaspiri...   370   e-104
gi|300312283|ref|YP_003776375.1| aconitate hydratase [Herbaspiri...   177   6e-46

>gi|300311598|ref|YP_003775690.1| aconitate hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 873

 Score =  370 bits (949), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/216 (82%), Positives = 192/216 (88%), Gaps = 1/216 (0%)

Query: 1   MADSAAGEYLAKMGLPEEDFNSYATHRGDHLTALRATFANPQLVNEMAV-VDGEVRKGSL 59
           + DSAAGEYLAKMGLPEEDFNSYATHRGDHLTA RATFANP+L NEM    DG V++GSL
Sbjct: 650 LLDSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVKKADGSVQQGSL 709

Query: 60  ARVEPDGKVMRMWEAIETYLNRKQPLIIVAGADYGQGSSRDWAAKGVRLAGVEVIAAEGF 119
           AR+EP+GKVMRMWE IETY+ RKQPLII+AGADYGQGSSRDWAAKGVRLAGVE I AEGF
Sbjct: 710 ARLEPEGKVMRMWETIETYMERKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGF 769

Query: 120 ERIHRTNLIGMGVLPLEFKPGTTRKTLGIDGTETFDVIGKRTPRADLTLVIIRKNGERVE 179
           ERIHRTNLIGMGVLPLEFK G  R T  IDGTET+DVIG+R PRADLTLVI RKNGERVE
Sbjct: 770 ERIHRTNLIGMGVLPLEFKAGENRNTYAIDGTETYDVIGQRRPRADLTLVIHRKNGERVE 829

Query: 180 VPMTCRLDTGEEVSIYEAGGVLQRFAQDFLASTVKA 215
           VP+TCRLDT EEVSIYEAGGVLQRFAQDFL ++  A
Sbjct: 830 VPVTCRLDTAEEVSIYEAGGVLQRFAQDFLEASANA 865


>gi|300312283|ref|YP_003776375.1| aconitate hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 903

 Score =  177 bits (449), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 134/213 (62%), Gaps = 5/213 (2%)

Query: 4   SAAGEYLAKMGLPEEDFNSYATHRGDHLTALRATFANPQLVNEM--AVVDGEVRKGSLAR 61
           S AG++L   G+ + DFNSY + RG+H   +R TFAN ++ N M  A  DG   +G +  
Sbjct: 691 SPAGKWLQANGVLKADFNSYGSRRGNHEIMMRGTFANVRIKNLMIPAKEDGSRVEGGITI 750

Query: 62  VEPDGKVMRMWEAIETYLNRKQPLIIVAGADYGQGSSRDWAAKGVRLAGVEVIAAEGFER 121
            +P G+ M +++A   Y+    P ++  G +YG GSSRDWAAKG +L GV+ + A  FER
Sbjct: 751 HQPSGEEMSIYDAAMKYVAEGTPTMVFGGEEYGTGSSRDWAAKGTQLLGVKAVIARSFER 810

Query: 122 IHRTNLIGMGVLPLEFKPGTTRKTLGIDGTETFDVI---GKRTPRADLTLVIIRKNGERV 178
           IHR+NL+GMGVLPL+F    + ++LGI G ETFD+    G+  P+ + TLVI RKNGE  
Sbjct: 811 IHRSNLVGMGVLPLQFLGNDSVQSLGITGDETFDLKGLEGEIKPQQEATLVIHRKNGETK 870

Query: 179 EVPMTCRLDTGEEVSIYEAGGVLQRFAQDFLAS 211
           EV +  R+DT  EV  Y+ GG+L    +  LA+
Sbjct: 871 EVKLLLRIDTPIEVDYYKHGGILPFVLRQLLAA 903


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 730,760
Number of extensions: 32678
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)