BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0013.p
         (58 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312418|ref|YP_003776510.1| signal peptide protein [Herbasp...   102   6e-24
gi|300312282|ref|YP_003776374.1| hypothetical protein Hsero_2978...    70   3e-14

>gi|300312418|ref|YP_003776510.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  102 bits (254), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 52/58 (89%)

Query: 1   VSLVWKGSTYKMTPVSTSTGALRFEDKGDGLVWIQIPSKSMLLNSKIGQQLANDCKNR 58
           V+LVWKG  Y M PVSTSTGA+R E+KG+GLVWIQIPSKSMLLN+KIGQQLANDC+ R
Sbjct: 86  VTLVWKGKNYMMNPVSTSTGAVRLENKGEGLVWIQIPSKSMLLNAKIGQQLANDCRTR 143


>gi|300312282|ref|YP_003776374.1| hypothetical protein Hsero_2978
           [Herbaspirillum seropedicae SmR1]
          Length = 182

 Score = 70.1 bits (170), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 1   VSLVWKGSTYKMTPVSTSTGALRFEDKGDGLVWIQIPSKSMLLNSKIGQQLANDCKN 57
           +++ W    +++T V T+TGA RFE++  GLVWI IP+K +LL+SK GQQLAN+CKN
Sbjct: 101 IAIRWDKRIHRLTRVETTTGANRFENRKMGLVWIGIPAKGLLLDSKKGQQLANECKN 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 170,473
Number of extensions: 4651
Number of successful extensions: 7
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 2
Length of query: 58
Length of database: 1,619,870
Length adjustment: 31
Effective length of query: 27
Effective length of database: 1,473,085
Effective search space: 39773295
Effective search space used: 39773295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)