BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0010.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312416|ref|YP_003776508.1| phosphinothricin N-acetyltransf...   230   4e-62
gi|300313844|ref|YP_003777936.1| sortase/acetyltransferase [Herb...   117   6e-28

>gi|300312416|ref|YP_003776508.1| phosphinothricin
           N-acetyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 167

 Score =  230 bits (587), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 107/163 (65%), Positives = 125/163 (76%)

Query: 1   MTTSIRPATTADAAAICEIYNHYVLTTTISFELEAVSTEEMAQRIVEVSAMFPWLVYEED 60
           M  SIRPAT ADA A+C IYNHYV TT ISFE E VS E M  RI EV A FPWLVYEE+
Sbjct: 1   MQPSIRPATAADAPALCGIYNHYVATTAISFETEPVSEESMVARIAEVQAKFPWLVYEEE 60

Query: 61  GRILGYAYATKWKARKAYQQSVESSVYMARDSGGKGVGTKLYRALFVELKARGVHAVMGG 120
           G++LGYAYAT+WK R AY+QSVESSVY+  D+GG+G+G +LYR LF ELK  G+H V+GG
Sbjct: 61  GQVLGYAYATQWKPRAAYRQSVESSVYLRHDAGGRGIGKRLYRQLFAELKPLGIHLVIGG 120

Query: 121 IAQPNPGSIALHEKMGFVKVAHFAQVGRKFDQWIDVAYWQLIL 163
           IAQPN  S+ALHE +GFVK   F +VG K  +WID+ YWQL L
Sbjct: 121 IAQPNAASVALHESLGFVKCGVFNEVGYKMGRWIDMGYWQLKL 163


>gi|300313844|ref|YP_003777936.1| sortase/acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  117 bits (292), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 89/160 (55%), Gaps = 1/160 (0%)

Query: 5   IRPATTADAAAICEIYNHYVLTTTISFELEAVSTEEMAQRIV-EVSAMFPWLVYEEDGRI 63
           IR A  AD A I  IYN  V  TT  +    V        +     + +P LV   DG++
Sbjct: 3   IRDAELADIAGITPIYNDAVANTTAIWNETLVDDRNREDWLTARRQSGYPVLVAVADGKV 62

Query: 64  LGYAYATKWKARKAYQQSVESSVYMARDSGGKGVGTKLYRALFVELKARGVHAVMGGIAQ 123
           LGYA    W+A   Y+ +VE SVY+ +D  G+G+G  L  AL    +A G H ++ GI  
Sbjct: 63  LGYASFGDWRAFDGYRHTVEHSVYVHKDHRGEGLGRALMEALIARARALGKHVMVAGIDA 122

Query: 124 PNPGSIALHEKMGFVKVAHFAQVGRKFDQWIDVAYWQLIL 163
            N GSI LH+K+GF +V +  QVG KF +W+D+A+ QL+L
Sbjct: 123 SNSGSINLHKKLGFEQVGYLPQVGTKFGKWLDLAFLQLML 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 507,947
Number of extensions: 18781
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)