BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0160.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310847|ref|YP_003774939.1| tryptophanyl-tRNA synthetase [H...   475   e-135
gi|300312574|ref|YP_003776666.1| tryptophanyl-tRNA synthetase [H...   141   5e-35

>gi|300310847|ref|YP_003774939.1| tryptophanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 344

 Score =  475 bits (1223), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/259 (88%), Positives = 243/259 (93%)

Query: 40  PIVLTGDRPTGPLHLGHYIGSLVSRVQLQDEASQFLLLADTQAMTDNVGRHQKVTENVVE 99
           P+VLTGDRPTGPLHLGHYIGSL SRV LQ+ + QFLLLADTQAMTDNVGRHQKVT+NV+E
Sbjct: 14  PVVLTGDRPTGPLHLGHYIGSLKSRVALQETSRQFLLLADTQAMTDNVGRHQKVTDNVLE 73

Query: 100 VALDYLAVGIDPEKSTIFIQSQVTELYELSMHLLNLVSVSRLERNPTIKEEIRLRGFERD 159
           VALDYLAVGIDPEKSTIFIQSQV ELYELSM LLNLV+VSRLERNPTIKEEIRLRGFERD
Sbjct: 74  VALDYLAVGIDPEKSTIFIQSQVRELYELSMVLLNLVTVSRLERNPTIKEEIRLRGFERD 133

Query: 160 IPAGFLTYPVSQAADISAFKATLVPVGNDQLPMIEQTNELVRRFNNVVGKDVLVECKEVL 219
           IPAGFLTYPVSQAADI+AFK  LVPVG+DQLPMIEQTNELVR+FN  V ++VLVECKEVL
Sbjct: 134 IPAGFLTYPVSQAADITAFKGQLVPVGSDQLPMIEQTNELVRKFNATVDREVLVECKEVL 193

Query: 220 SETGRLPGIDGKAKMSKSLGNSIALGASPAEIKQAVQRMYTDPNHLRVDDPGQVEGNVVF 279
           SETGRLPGIDGKAKMSKSLGNSIALGA+PAEIKQAV RMYTDPNHLRVDDPGQVEGNVVF
Sbjct: 194 SETGRLPGIDGKAKMSKSLGNSIALGATPAEIKQAVHRMYTDPNHLRVDDPGQVEGNVVF 253

Query: 280 AFLDAFEPDRVALEELKQH 298
            FLDAF+PDR A+ ELK H
Sbjct: 254 TFLDAFDPDRDAVAELKAH 272


>gi|300312574|ref|YP_003776666.1| tryptophanyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  141 bits (356), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 117/185 (63%), Gaps = 3/185 (1%)

Query: 42  VLTGDRPTGPLHLGHYIGSLVSRVQLQDEASQFLLLADTQAMTDNVGRHQKVTENVVEVA 101
           V++G RPTG LHLGHY G+L + V+LQ E      +AD  A+T +      +  +  E+ 
Sbjct: 6   VVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETSTWEMV 65

Query: 102 LDYLAVGIDPEKSTIFIQSQVTELYELSMHLLNLVSVSRLERNPTIKEEIRLRGFERDIP 161
           +D+LA G+DP +ST+FIQS+V E  EL + L     +  LER PT K++ + +  +RD+ 
Sbjct: 66  IDWLAAGVDPAQSTLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQ-QEKLADRDLA 124

Query: 162 A-GFLTYPVSQAADISAFKATLVPVGNDQLPMIEQTNELVRRFNNVVGKDVLVECKEVLS 220
             GFL YP+ QAAD+  ++A+ VPVG DQ+P IE   E+ RRFN++ GK+   E ++ L+
Sbjct: 125 TYGFLGYPLLQAADVLIYRASQVPVGEDQVPHIEIMREIARRFNHLYGKEKGFE-EKALA 183

Query: 221 ETGRL 225
            T +L
Sbjct: 184 ATKKL 188



 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 201 RRFNNVVG--KDVLVECKEVLSETGRLPGIDGKAKMSKSLGNSIALGASPAEIKQAVQRM 258
           R F  + G  K +L E + +L+E  RLPG+DG AKMSKS GN+IAL      + + V+ M
Sbjct: 232 RLFGYLEGSRKLILTEPQAMLTEASRLPGLDG-AKMSKSYGNAIALREDKESVTKKVKTM 290

Query: 259 YTDPNHLRVDDPGQVEGNVVFAFLDAF 285
            TDP  +R  DPG  +   V+ F   +
Sbjct: 291 PTDPQRVRRSDPGDPDKCPVWQFHQVY 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 840,495
Number of extensions: 31938
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 3
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)