BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0157.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310848|ref|YP_003774940.1| two component sensor histidine ...   159   8e-41

>gi|300310848|ref|YP_003774940.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 465

 Score =  159 bits (403), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 99/133 (74%), Gaps = 6/133 (4%)

Query: 8   LREFVGSIGNRVFLILLAGILVATVTTTWLASNERRNTMRELRYQHVAERVEQVVQALDP 67
           ++ F+GSIGNR+F +LL GI+VA   T WLA NERRNT+RELR+QH+A+RVEQ+VQA+D 
Sbjct: 1   MKNFLGSIGNRIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDN 60

Query: 68  LTPQARDVVLHAADNFGFEAGFVNEVGDM------QSPSTGPMADMLKSRLGEDRQIVVQ 121
           + P  R +VL AA NFGFEA  V ++ D        SPST P+ +ML++RLGEDR+I VQ
Sbjct: 61  IPPAQRPIVLQAASNFGFEARMVEDMNDAIGPDASPSPSTSPLTEMLQARLGEDRKIAVQ 120

Query: 122 RETDCAPRRPRNA 134
           RE++C P R  +A
Sbjct: 121 RESECPPLRTDDA 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 395,448
Number of extensions: 14123
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)