BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0156.p (245 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310849|ref|YP_003774941.1| two component transcription reg... 440 e-125 gi|300313665|ref|YP_003777757.1| two component transcription reg... 271 5e-74 gi|300313830|ref|YP_003777922.1| response regulator protein [Her... 213 9e-57 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 184 4e-48 gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 143 2e-35 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 440 bits (1131), Expect = e-125, Method: Compositional matrix adjust. Identities = 216/245 (88%), Positives = 233/245 (95%) Query: 1 MAAMDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLT 60 M MDTN+HILVVDDDR+IRTLLAEYLD+NG RTLTATNG++MR+VL+ESRVDLIVLDLT Sbjct: 1 MRPMDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLT 60 Query: 61 LPGEDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS 120 LPGEDGLTLCRNLRA S+VPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS Sbjct: 61 LPGEDGLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS 120 Query: 121 VLRRTQALPPSMMRPEAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPN 180 VLRRTQALPP+M +P+ M F+GWTLDLTARHL+N +GVVVALSGAEFR+LKVFLDHPN Sbjct: 121 VLRRTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPN 180 Query: 181 RILNRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 R+LNRDQLLELTQGRE+DPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT Sbjct: 181 RVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 Query: 241 LEDAG 245 E AG Sbjct: 241 TEGAG 245 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 271 bits (692), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 170/236 (72%) Query: 4 MDTNSHILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPG 63 M H+L+VDDD +IR LLA+YL+A +R TA G +M ++L R+D+I+LDL +PG Sbjct: 1 MGKQDHVLIVDDDPDIRHLLADYLEAASYRPFTAAGGQEMWRILGSERIDIIILDLMMPG 60 Query: 64 EDGLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 123 EDGL LCR LR + N P++MLTARG +DRI+GLE+GADDYL KPF+PREL ARI+ +LR Sbjct: 61 EDGLELCRELRKKRNTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILR 120 Query: 124 RTQALPPSMMRPEAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNRIL 183 R ++ P + +HF+GW LD AR ++P GV + L G+++++L+ L+HP R L Sbjct: 121 RARSFPEKLEADRVSHIHFAGWKLDTQARQAISPSGVTITLGGSDYQVLRALLEHPRRAL 180 Query: 184 NRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTV 239 +RD LL G+EA PFDRS+D+ ISRLRQ+LGD+ R P +I+TVRN GY+L V Sbjct: 181 SRDFLLNTVYGKEAMPFDRSIDVCISRLRQQLGDNPREPALIRTVRNTGYMLMADV 236 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 213 bits (543), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 162/239 (67%), Gaps = 18/239 (7%) Query: 10 ILVVDDDREIRTLLAEYLDANGFRTLTATNGA----DMRKVLDESRVDLIVLDLTLPGED 65 IL+VDDD++ RTLL YL+ N + A +GA + +++ DE + L++LD+ LP D Sbjct: 5 ILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGATFLAEFQRLADE--LSLVILDVMLPDTD 62 Query: 66 GLTLCRNLRAQSNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRR- 124 G LC+ +R +SNVPVIMLTA + DR++GLE+GADDY+AKP+ PREL ARI+++ RR Sbjct: 63 GFALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRRI 122 Query: 125 ---TQALPPSMMRPEAKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNR 181 + A P + F+G++LD R L++ +G +V L+G ++++LK F++HP Sbjct: 123 GIDSSAAP--------RYYRFAGFSLDTVERTLVDSQGDIVPLTGMDYQLLKYFVEHPGD 174 Query: 182 ILNRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 240 +L+R+ L E T+GR+A P DRS+D+QIS+LR +L D R P +IKTVR GYV + V+ Sbjct: 175 VLDRNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVS 233 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 184 bits (468), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 103/208 (49%), Positives = 132/208 (63%), Gaps = 3/208 (1%) Query: 30 NGFRTLTATNGADMRKVLDESRVDLIVLDLTLPGEDGLTLCRNLR-AQSNVPVIMLTARG 88 GF +TA N M K+ R DL+VLDL LPGEDGL +CR LR A P+IMLTA+G Sbjct: 40 QGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKG 99 Query: 89 EPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQALP-PSMMRPEAKTMHFSGWTL 147 E +DRI+GLEMGADDYL KPF PREL ARI +VLRR P +T F + L Sbjct: 100 EDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFIL 159 Query: 148 DLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNRILNRDQLLELTQGREADPFDRSVDIQ 207 DL R L G ++L+ EF +LKVF + + L+R++L+E+ +GRE + FDRS+D+Q Sbjct: 160 DLGTRT-LKKNGDTISLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQ 218 Query: 208 ISRLRQKLGDDARTPTIIKTVRNEGYVL 235 ISRLR+ + D P I+TV GYV Sbjct: 219 ISRLRKLIEPDPANPLYIQTVWGLGYVF 246 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 143 bits (360), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 134/234 (57%), Gaps = 17/234 (7%) Query: 9 HILVVDDDREIRTLLAEYLDANGFRTLTATNGADMRKVLDESRVDLIVLDLTLPGEDGLT 68 HIL+V+D+ I LL + GF T AT+ A RK + ES +++LD LP GL Sbjct: 7 HILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLV 66 Query: 69 LCRNLRAQ---SNVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRT 125 L LR +++PVIMLTA+G D++ GL GADDY+ KPF P+EL AR++++LRR Sbjct: 67 LLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRK 126 Query: 126 QALPPSMMRPE--AKTMHFSGWTLDLTARHLLNPEGVVVALSGAEFRMLKVFLDHPNRIL 183 PE ++ + + ++D+ R + + V+ L AEF++L+ + HP RI Sbjct: 127 A--------PEIGSQALKYRDISIDVERRQVSVADKPVL-LDQAEFKLLRYLVAHPERIF 177 Query: 184 NRDQLLELTQGREADPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLAT 237 +R QLL+ G +R+VD+ I RLR+ LGD A ++TVR GY L+ Sbjct: 178 SRAQLLDKVWGDHTFIEERTVDVHIMRLRKSLGDLAH---YVQTVRGMGYKLSA 228 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 744,829 Number of extensions: 31076 Number of successful extensions: 273 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 53 Length of query: 245 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 162 Effective length of database: 1,226,865 Effective search space: 198752130 Effective search space used: 198752130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)