BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0155.p
         (183 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310850|ref|YP_003774942.1| hypothetical protein Hsero_1519...   167   5e-43

>gi|300310850|ref|YP_003774942.1| hypothetical protein Hsero_1519
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  167 bits (423), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/183 (55%), Positives = 120/183 (65%), Gaps = 8/183 (4%)

Query: 1   MLNLKKHLMIGVAAAGIGLTAMSSFAQMPPAGPGGPDGRHMPTPEQIAKFEQHRAKRQAA 60
           ML +K  ++ G+AA  I    +S+FAQMPP GP G       +PEQ+AKFEQ RAK QA 
Sbjct: 1   MLTIKNRILSGIAAVSISAVTLSAFAQMPPGGPQGHPP----SPEQVAKFEQMRAKHQAE 56

Query: 61  LHDKLKITAAQEGAWKTFTDKTTPQRPATPPARPDKDEWNKLTTPERLDRHLDRMKQMEA 120
           LHDKLKITA+QE AWK F DKT P  P     RP+KDEW KL+TPERLD+ LD M++ EA
Sbjct: 57  LHDKLKITASQEAAWKLFLDKTKPA-PFDQAGRPNKDEWAKLSTPERLDKQLDMMRKREA 115

Query: 121 RMTDHIAATKEFYAVLSPEQQKVFDQEFRKMEEHRF---KHGRFGDDHGRDHGKRDAPAT 177
                IAATK+FYA LSP+QQK+FD E  KME HR+   +H R GD  G  H    AP  
Sbjct: 116 FAEQRIAATKDFYATLSPQQQKIFDAEHAKMERHRWEKMEHMRRGDRKGPPHDGNPAPVA 175

Query: 178 APA 180
            PA
Sbjct: 176 PPA 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 527,107
Number of extensions: 19097
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,241,070
Effective search space: 127830210
Effective search space used: 127830210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)