BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0147.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313963|ref|YP_003778055.1| L-aspartate dehydrogenase [Herb...   100   2e-22

>gi|300313963|ref|YP_003778055.1| L-aspartate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 130/259 (50%), Gaps = 14/259 (5%)

Query: 2   LHVSMIGCGAIGVGVMELL-KSDPEVAFDVVIVPEANMANARTVVSSLAPKARVETRLGD 60
           ++V++ G GAIG  V   + K  P +    V V + + A  R  + +  P       L D
Sbjct: 1   MNVAIAGLGAIGWAVAHAIDKGMPGITLSAVAVRDPDAAAERLRMLAHPPACVALASLAD 60

Query: 61  DRPDLLIECAGHQAIEEHIIPALLRGIPCMVVSIGAL-SEPGLVEKLEAAAREGKTQVQL 119
              D+++ECAG   + E   P L  G   + +S G   S P L    +      ++Q+ +
Sbjct: 61  -YGDVVVECAGAHVLREIADPVLESGRQLVAMSAGGFVSSPALALLWQ----RYRSQIHI 115

Query: 120 LSGAIGAIDALSAARVGGLESVVYTGRKPPNAWKDTPADGL----FDLANLTVATVIFEG 175
            SGA+G +DA++A   G +++V     KP  A +  P  GL     DL +LT  T +F G
Sbjct: 116 PSGALGGLDAVAAMAEGHIDTVRLVSTKPAAALRGAP--GLTQLGIDLQSLTGPTQVFGG 173

Query: 176 TAREAARLYPKNANVAATLSLAGLGLDHTQVRLYADPGVTENVHHVEARGEFGGFELTMR 235
           TA +A  L+P N NVAA L+LAG G   T V L+ DP    N H VE + + G    +M 
Sbjct: 174 TAAQALELFPDNLNVAAALALAGAGAHRTMVELWLDPHARTNRHEVEVQADSGRLRFSMD 233

Query: 236 GKPLAANPKTSALTVFSVV 254
             P ++NP+TS+L   SV+
Sbjct: 234 AMP-SSNPRTSSLAAQSVL 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 829,510
Number of extensions: 33834
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)