BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0144.p
         (111 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr...   135   7e-34
gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr...    92   9e-21
gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr...    86   6e-19
gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb...    52   9e-09

>gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump
          protein [Herbaspirillum seropedicae SmR1]
          Length = 1078

 Score =  135 bits (340), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 78/96 (81%)

Query: 1  MNISRPFIERPIATTLLTIGIALAGMLAFKLLPVSPLPQVDYPTISVSASMPGASPETMA 60
          MNIS PFI+RPIATTLLTIGIALAG++AF+LLPVSPLPQVDYPTIS+SASMPGASPETMA
Sbjct: 1  MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60

Query: 61 ATIATPLERASGTAAGSGAARRCACATSPRSRIRWP 96
          AT+ATPLERA G  AG       +   S R  +++ 
Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFD 96


>gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump
          protein [Herbaspirillum seropedicae SmR1]
          Length = 1051

 Score = 92.0 bits (227), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 56/76 (73%)

Query: 1  MNISRPFIERPIATTLLTIGIALAGMLAFKLLPVSPLPQVDYPTISVSASMPGASPETMA 60
          M++S  FI+RPI TTLL I I L G+  + LLPV+PLPQVD+PTI V+A +PG SPETMA
Sbjct: 1  MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60

Query: 61 ATIATPLERASGTAAG 76
          + +A PLER     AG
Sbjct: 61 SNVAQPLERQFSLIAG 76


>gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump
          transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1048

 Score = 85.9 bits (211), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 54/76 (71%)

Query: 1  MNISRPFIERPIATTLLTIGIALAGMLAFKLLPVSPLPQVDYPTISVSASMPGASPETMA 60
          MN SR FI RP+AT+LL + I L G++A++LLP+S LP+VDYPTI V    PGASP+ M 
Sbjct: 1  MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60

Query: 61 ATIATPLERASGTAAG 76
          +++  PLER  G   G
Sbjct: 61 SSVTAPLERQFGQMPG 76


>gi|300309819|ref|YP_003773911.1| acriflavin resistance
          transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1048

 Score = 52.4 bits (124), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query: 3  ISRPFIERPIATTLLTIGIALAGMLAFKLLPVSPLPQVDYPTISVSASMPGASPETMAAT 62
          + + FI+RP+   +L I I LAG LA   LPVS  P +  PTI V+A+ PGA+ +T+  +
Sbjct: 1  MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60

Query: 63 IATPLERASGTAAG 76
          + + +E+    A G
Sbjct: 61 VTSLIEQEMNGADG 74


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 296,414
Number of extensions: 9315
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 6
Length of query: 111
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 38
Effective length of database: 1,274,215
Effective search space: 48420170
Effective search space used: 48420170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)