BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0143.p
         (123 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr...   135   1e-33
gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr...   105   2e-24
gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr...   101   1e-23
gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr...    67   5e-13
gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr...    67   5e-13

>gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1078

 Score =  135 bits (339), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 80/87 (91%)

Query: 1   VLVILNRQPGANIIETVDAVNGLLPNLKASIPHAINLEVMMDRTPTIRASLKDTEKTLLM 60
           VL+I+NRQPGANII+TVD V  LLP L+ASIP AI+++V++DRTPTIRASLK+TE TL++
Sbjct: 281 VLIIINRQPGANIIDTVDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLIL 340

Query: 61  SIALVIMVVFLFLRNGRATLIPSVAVP 87
           S+ALVIMVVFLFLRN RATLIP+VAVP
Sbjct: 341 SVALVIMVVFLFLRNARATLIPAVAVP 367


>gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1048

 Score =  105 bits (261), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 70/87 (80%)

Query: 1   VLVILNRQPGANIIETVDAVNGLLPNLKASIPHAINLEVMMDRTPTIRASLKDTEKTLLM 60
           V+V + RQPGAN+I  VD++  +LP L+AS+P AI++ ++ DRT TIRAS+ D +  LL+
Sbjct: 281 VIVNIQRQPGANVIAVVDSIKKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLL 340

Query: 61  SIALVIMVVFLFLRNGRATLIPSVAVP 87
           S+ALV+MV+F+FLRN  AT+IPSVAVP
Sbjct: 341 SVALVVMVIFVFLRNVPATIIPSVAVP 367


>gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1051

 Score =  101 bits (252), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 70/87 (80%)

Query: 1   VLVILNRQPGANIIETVDAVNGLLPNLKASIPHAINLEVMMDRTPTIRASLKDTEKTLLM 60
           +++ + +QPGAN+IETV  +   +P L+A+IP AI++  ++DRT TIRAS++D E TL++
Sbjct: 293 IVLAITKQPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVL 352

Query: 61  SIALVIMVVFLFLRNGRATLIPSVAVP 87
           +IALV+MV+F+FLRN  ATLIPSV VP
Sbjct: 353 TIALVVMVIFVFLRNVAATLIPSVTVP 379


>gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1051

 Score = 67.0 bits (162), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 2/80 (2%)

Query: 10  GANIIETVDAVNGLLPNLKASIPHAINLE--VMMDRTPTIRASLKDTEKTLLMSIALVIM 67
           GAN + T DAV   L  L+   P ++ L+  +  D TP +R SL++  KTL+ +I LV++
Sbjct: 296 GANALATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVL 355

Query: 68  VVFLFLRNGRATLIPSVAVP 87
           +++LFL+N RAT IP++ VP
Sbjct: 356 IMYLFLQNIRATFIPAITVP 375


>gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1049

 Score = 66.6 bits (161), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 54/78 (69%)

Query: 10  GANIIETVDAVNGLLPNLKASIPHAINLEVMMDRTPTIRASLKDTEKTLLMSIALVIMVV 69
           GAN ++TV A++  +  L+   P  + ++   D TP +R S+++  +TL+ ++ LV +V+
Sbjct: 296 GANALDTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVM 355

Query: 70  FLFLRNGRATLIPSVAVP 87
           +LFL+N RATLIP++AVP
Sbjct: 356 YLFLQNFRATLIPTIAVP 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 266,130
Number of extensions: 7903
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 8
Length of query: 123
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 49
Effective length of database: 1,269,480
Effective search space: 62204520
Effective search space used: 62204520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)