BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0142.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr...   286   8e-79
gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr...   144   4e-36
gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr...   144   4e-36

>gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1078

 Score =  286 bits (732), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 136/149 (91%), Positives = 146/149 (97%)

Query: 45  ARDVQAALNAARSLLPSGMPSSPSYRKVNPADAPIMILALTSDTMTQGQMYDAADSILAQ 104
           ARDVQAALNAAR+LLP+GMPS+P+YRKVNPADAPI+ILA+TSDTMTQGQMYDAADSI+AQ
Sbjct: 105 ARDVQAALNAARNLLPTGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQ 164

Query: 105 KLSQVRGIGQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGIVEDGD 164
           KLSQVRG+GQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKG++ED D
Sbjct: 165 KLSQVRGVGQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQD 224

Query: 165 RNWQIYANDQVKTAAEYAPLIVSYRNGAP 193
           RNWQIYANDQ KTAAEYAPLIVSYRNG P
Sbjct: 225 RNWQIYANDQAKTAAEYAPLIVSYRNGTP 253


>gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1051

 Score =  144 bits (364), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 106/151 (70%)

Query: 43  ARARDVQAALNAARSLLPSGMPSSPSYRKVNPADAPIMILALTSDTMTQGQMYDAADSIL 102
           A A DVQAA+NA+   LP+ +P+ P++RK+NPAD+PIMI+++ S+ +    + D AD+IL
Sbjct: 103 AAALDVQAAINASTGQLPANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNIL 162

Query: 103 AQKLSQVRGIGQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGIVED 162
           AQ++SQ+ G+G V+V G  +PAVRI+++P  L   G+   D+R  +A T  N+PKG V+ 
Sbjct: 163 AQQISQISGVGLVNVNGQQKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDG 222

Query: 163 GDRNWQIYANDQVKTAAEYAPLIVSYRNGAP 193
             + + +Y NDQ+  A ++  +++++RNGAP
Sbjct: 223 ARQAFTVYTNDQLLKAEQWNDMVLAWRNGAP 253


>gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 1048

 Score =  144 bits (364), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 103/148 (69%)

Query: 46  RDVQAALNAARSLLPSGMPSSPSYRKVNPADAPIMILALTSDTMTQGQMYDAADSILAQK 105
           ++VQAA+NA  +LLPS +P  P Y KVNPAD PI+ LA+TS+TM   ++ D  D+ +AQK
Sbjct: 106 QEVQAAINAGSNLLPSDLPMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQK 165

Query: 106 LSQVRGIGQVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGIVEDGDR 165
           +SQ+ G+G VS+ G  +PAVR++LNP A+   G+   DVRTA+   N N+ KG  +   R
Sbjct: 166 ISQLSGVGLVSLSGGQRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTR 225

Query: 166 NWQIYANDQVKTAAEYAPLIVSYRNGAP 193
              I ANDQ+++A EY  LI++Y+NGAP
Sbjct: 226 ASTIDANDQLRSADEYRNLIIAYKNGAP 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 448,268
Number of extensions: 13845
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 5
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)