BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0138.p (118 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310854|ref|YP_003774946.1| NodT family protein [Herbaspiri... 170 3e-44 gi|300311796|ref|YP_003775888.1| outer membrane channel lipoprot... 104 2e-24 gi|300309656|ref|YP_003773748.1| outer membrane drug efflux prot... 82 1e-17 gi|300313898|ref|YP_003777990.1| outer membrane drug efflux lipo... 80 4e-17 gi|300313892|ref|YP_003777984.1| outer membrane drug efflux lipo... 58 2e-10 >gi|300310854|ref|YP_003774946.1| NodT family protein [Herbaspirillum seropedicae SmR1] Length = 507 Score = 170 bits (430), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 87/115 (75%), Positives = 99/115 (86%) Query: 3 AAYKQTVLTAFQEVEDNLAALRILEQEAVVQNEALQSARQAVTLVTNQYKAGTVNYTSVI 62 A YKQTVLTAFQEVEDNLAALRILEQEA VQ EALQ+ARQAVTLV NQYKAGTV+Y +VI Sbjct: 384 ATYKQTVLTAFQEVEDNLAALRILEQEAAVQGEALQAARQAVTLVNNQYKAGTVSYVNVI 443 Query: 63 TAQATALTSERTALDILYRRMAASVLLTKALGGGWSEQNIADLGALASQSESSKK 117 TAQATAL++E ++L+IL RRMAASVLL KALGGGW E+++ DLG+L QS K Sbjct: 444 TAQATALSAELSSLNILNRRMAASVLLAKALGGGWDERSLDDLGSLQQQSAEKAK 498 >gi|300311796|ref|YP_003775888.1| outer membrane channel lipoprotein [Herbaspirillum seropedicae SmR1] Length = 510 Score = 104 bits (259), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 53/93 (56%), Positives = 69/93 (74%) Query: 5 YKQTVLTAFQEVEDNLAALRILEQEAVVQNEALQSARQAVTLVTNQYKAGTVNYTSVITA 64 YKQTVL QEVED L+ LR+L+QE+ VQ +A+QSA+ A L QY+AGTV Y SV+T Sbjct: 411 YKQTVLGGLQEVEDKLSTLRVLDQESTVQAQAVQSAQLAERLAMRQYEAGTVTYLSVVTT 470 Query: 65 QATALTSERTALDILYRRMAASVLLTKALGGGW 97 QA +LT++R A+ +L R++ ASV L KA GGGW Sbjct: 471 QAASLTNQRNAVTLLGRQLVASVALIKATGGGW 503 >gi|300309656|ref|YP_003773748.1| outer membrane drug efflux protein [Herbaspirillum seropedicae SmR1] Length = 504 Score = 82.4 bits (202), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/95 (47%), Positives = 64/95 (67%) Query: 3 AAYKQTVLTAFQEVEDNLAALRILEQEAVVQNEALQSARQAVTLVTNQYKAGTVNYTSVI 62 A+Y+ TVL AF+EVEDNLA LRIL+Q+ Q+EA+ ++ +A L QY+ G V+Y SVI Sbjct: 399 ASYRGTVLNAFREVEDNLANLRILDQQNRAQDEAVAASARAAKLSHTQYREGAVSYFSVI 458 Query: 63 TAQATALTSERTALDILYRRMAASVLLTKALGGGW 97 A T L +R ++ + R ++V L +ALGGGW Sbjct: 459 DADRTVLQQQRASVTLDGERARSTVNLIRALGGGW 493 >gi|300313898|ref|YP_003777990.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 486 Score = 80.5 bits (197), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 42/95 (44%), Positives = 60/95 (63%) Query: 3 AAYKQTVLTAFQEVEDNLAALRILEQEAVVQNEALQSARQAVTLVTNQYKAGTVNYTSVI 62 A+Y++TVLTA QEVED + L LE+ A+ SAR+ + + +++Y+ G Y VI Sbjct: 375 ASYRRTVLTAMQEVEDGITGLAALERAYAQSQLAIASARRVLEIASSRYEGGATPYLDVI 434 Query: 63 TAQATALTSERTALDILYRRMAASVLLTKALGGGW 97 TAQ + L SER A ++ +R+ SV L KALGG W Sbjct: 435 TAQQSLLNSERQAAQLMGQRLLVSVFLIKALGGDW 469 >gi|300313892|ref|YP_003777984.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 497 Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 55/98 (56%) Query: 3 AAYKQTVLTAFQEVEDNLAALRILEQEAVVQNEALQSARQAVTLVTNQYKAGTVNYTSVI 62 A Y++ + TAF+EV D LA L+Q Q +A ++ +A L +Y+ G +Y + + Sbjct: 390 ANYEKAIQTAFREVADALAVRATLDQRLDAQGKATAASEKAFRLSDARYRNGVDSYLTTL 449 Query: 63 TAQATALTSERTALDILYRRMAASVLLTKALGGGWSEQ 100 AQ T ++++T + + + + L K LGGGWSEQ Sbjct: 450 VAQRTLYSAQQTLISLRLTEQSNRITLYKVLGGGWSEQ 487 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.120 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 257,726 Number of extensions: 7083 Number of successful extensions: 56 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 10 Length of query: 118 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 44 Effective length of database: 1,269,480 Effective search space: 55857120 Effective search space used: 55857120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 124 (52.4 bits)